Strain Fitness in Xanthobacter sp. DMC5 around GFF1635

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1634 and GFF1635 are separated by 237 nucleotidesGFF1635 and GFF1636 are separated by 87 nucleotidesGFF1636 and GFF1637 are separated by 131 nucleotides GFF1634 - Esterase EstA, at 284,324 to 286,216 GFF1634 GFF1635 - hypothetical protein, at 286,454 to 287,416 GFF1635 GFF1636 - Glutathione S-transferase GST-6.0, at 287,504 to 288,163 GFF1636 GFF1637 - hypothetical protein, at 288,295 to 288,762 GFF1637 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1at 285.468 kb on + strand, within GFF1634at 285.468 kb on + strand, within GFF1634at 285.519 kb on + strand, within GFF1634at 285.520 kb on - strand, within GFF1634at 285.534 kb on + strand, within GFF1634at 285.535 kb on - strand, within GFF1634at 285.535 kb on - strand, within GFF1634at 285.627 kb on + strand, within GFF1634at 285.628 kb on - strand, within GFF1634at 285.780 kb on + strand, within GFF1634at 285.822 kb on + strand, within GFF1634at 285.822 kb on + strand, within GFF1634at 285.823 kb on - strand, within GFF1634at 285.823 kb on - strand, within GFF1634at 285.853 kb on + strand, within GFF1634at 285.856 kb on + strand, within GFF1634at 285.856 kb on + strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.858 kb on + strand, within GFF1634at 285.858 kb on + strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.864 kb on + strand, within GFF1634at 285.865 kb on - strand, within GFF1634at 285.921 kb on + strand, within GFF1634at 285.922 kb on - strand, within GFF1634at 285.975 kb on + strand, within GFF1634at 285.975 kb on + strand, within GFF1634at 285.996 kb on + strand, within GFF1634at 285.996 kb on + strand, within GFF1634at 286.080 kb on + strandat 286.080 kb on + strandat 286.081 kb on - strandat 286.081 kb on - strandat 286.081 kb on - strandat 286.083 kb on + strandat 286.083 kb on + strandat 286.083 kb on + strandat 286.084 kb on - strandat 286.084 kb on - strandat 286.084 kb on - strandat 286.119 kb on + strandat 286.220 kb on - strandat 286.464 kb on + strandat 286.465 kb on - strandat 286.600 kb on + strand, within GFF1635at 286.601 kb on - strand, within GFF1635at 286.719 kb on + strand, within GFF1635at 286.719 kb on + strand, within GFF1635at 286.720 kb on - strand, within GFF1635at 286.836 kb on + strand, within GFF1635at 286.872 kb on + strand, within GFF1635at 286.873 kb on - strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.310 kb on + strand, within GFF1635at 287.311 kb on - strand, within GFF1635at 287.465 kb on - strandat 287.645 kb on + strand, within GFF1636at 287.796 kb on - strand, within GFF1636at 287.813 kb on + strand, within GFF1636at 287.813 kb on + strand, within GFF1636at 287.828 kb on + strand, within GFF1636at 287.829 kb on - strand, within GFF1636at 287.829 kb on - strand, within GFF1636at 287.948 kb on + strand, within GFF1636at 287.948 kb on + strand, within GFF1636at 287.948 kb on + strand, within GFF1636at 287.948 kb on + strand, within GFF1636at 287.948 kb on + strand, within GFF1636at 287.949 kb on - strand, within GFF1636at 287.949 kb on - strand, within GFF1636at 287.949 kb on - strand, within GFF1636at 288.053 kb on + strand, within GFF1636at 288.053 kb on + strand, within GFF1636at 288.053 kb on + strand, within GFF1636at 288.053 kb on + strand, within GFF1636at 288.053 kb on + strand, within GFF1636at 288.110 kb on - strandat 288.110 kb on - strandat 288.110 kb on - strandat 288.110 kb on - strandat 288.275 kb on + strandat 288.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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285,468 + GFF1634 0.60 -0.1
285,468 + GFF1634 0.60 -1.4
285,519 + GFF1634 0.63 +0.8
285,520 - GFF1634 0.63 +0.7
285,534 + GFF1634 0.64 -1.0
285,535 - GFF1634 0.64 -0.4
285,535 - GFF1634 0.64 -0.4
285,627 + GFF1634 0.69 +0.5
285,628 - GFF1634 0.69 +0.9
285,780 + GFF1634 0.77 +1.0
285,822 + GFF1634 0.79 -0.6
285,822 + GFF1634 0.79 -0.5
285,823 - GFF1634 0.79 +1.2
285,823 - GFF1634 0.79 +0.3
285,853 + GFF1634 0.81 +0.4
285,856 + GFF1634 0.81 +0.6
285,856 + GFF1634 0.81 -0.3
285,857 - GFF1634 0.81 +0.3
285,857 - GFF1634 0.81 +1.1
285,857 - GFF1634 0.81 +0.1
285,857 - GFF1634 0.81 -1.3
285,858 + GFF1634 0.81 -0.1
285,858 + GFF1634 0.81 +0.2
285,859 - GFF1634 0.81 +0.1
285,859 - GFF1634 0.81 -1.7
285,859 - GFF1634 0.81 +0.5
285,859 - GFF1634 0.81 -0.7
285,864 + GFF1634 0.81 -0.3
285,865 - GFF1634 0.81 -0.4
285,921 + GFF1634 0.84 +0.5
285,922 - GFF1634 0.84 +0.4
285,975 + GFF1634 0.87 -0.2
285,975 + GFF1634 0.87 -0.1
285,996 + GFF1634 0.88 +0.3
285,996 + GFF1634 0.88 +0.2
286,080 + +0.7
286,080 + -0.8
286,081 - -0.6
286,081 - -0.7
286,081 - -0.3
286,083 + -0.5
286,083 + +0.6
286,083 + -0.7
286,084 - -0.9
286,084 - -0.3
286,084 - +0.4
286,119 + -0.2
286,220 - +1.1
286,464 + +0.6
286,465 - +0.2
286,600 + GFF1635 0.15 +0.3
286,601 - GFF1635 0.15 +0.5
286,719 + GFF1635 0.28 -0.5
286,719 + GFF1635 0.28 +0.6
286,720 - GFF1635 0.28 -0.6
286,836 + GFF1635 0.40 -0.9
286,872 + GFF1635 0.43 +1.3
286,873 - GFF1635 0.44 -2.6
287,019 + GFF1635 0.59 -0.1
287,019 + GFF1635 0.59 -1.3
287,019 + GFF1635 0.59 +0.3
287,020 - GFF1635 0.59 +0.7
287,020 - GFF1635 0.59 +0.7
287,020 - GFF1635 0.59 +0.5
287,020 - GFF1635 0.59 +0.0
287,310 + GFF1635 0.89 +0.2
287,311 - GFF1635 0.89 +0.1
287,465 - +0.4
287,645 + GFF1636 0.21 +0.1
287,796 - GFF1636 0.44 +0.9
287,813 + GFF1636 0.47 +0.2
287,813 + GFF1636 0.47 -0.6
287,828 + GFF1636 0.49 -0.3
287,829 - GFF1636 0.49 -0.8
287,829 - GFF1636 0.49 -1.6
287,948 + GFF1636 0.67 +0.5
287,948 + GFF1636 0.67 -0.7
287,948 + GFF1636 0.67 -0.3
287,948 + GFF1636 0.67 +0.4
287,948 + GFF1636 0.67 +0.9
287,949 - GFF1636 0.67 -1.0
287,949 - GFF1636 0.67 +1.1
287,949 - GFF1636 0.67 -0.5
288,053 + GFF1636 0.83 +0.3
288,053 + GFF1636 0.83 -0.4
288,053 + GFF1636 0.83 -0.2
288,053 + GFF1636 0.83 +0.6
288,053 + GFF1636 0.83 +0.3
288,110 - -0.2
288,110 - +0.5
288,110 - +0.5
288,110 - +0.8
288,275 + +0.7
288,293 + +0.1

Or see this region's nucleotide sequence