Strain Fitness in Xanthobacter sp. DMC5 around GFF1632

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1631 and GFF1632 are separated by 889 nucleotidesGFF1632 and GFF1633 are separated by 57 nucleotides GFF1631 - hypothetical protein, at 280,501 to 280,803 GFF1631 GFF1632 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 281,693 to 282,541 GFF1632 GFF1633 - Peptide chain release factor 3, at 282,599 to 284,206 GFF1633 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1at 280.896 kb on + strandat 280.896 kb on + strandat 280.896 kb on + strandat 280.897 kb on - strandat 280.897 kb on - strandat 280.917 kb on - strandat 280.917 kb on - strandat 281.138 kb on - strandat 281.168 kb on - strandat 281.410 kb on - strandat 281.410 kb on - strandat 281.668 kb on + strandat 281.669 kb on - strandat 282.581 kb on - strandat 283.429 kb on - strand, within GFF1633

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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280,896 + +1.3
280,896 + -0.4
280,896 + +0.0
280,897 - +1.0
280,897 - -0.8
280,917 - +0.3
280,917 - -0.5
281,138 - -0.6
281,168 - +0.3
281,410 - +0.1
281,410 - +0.6
281,668 + +0.6
281,669 - +0.2
282,581 - +1.4
283,429 - GFF1633 0.52 +0.2

Or see this region's nucleotide sequence