Strain Fitness in Xanthobacter sp. DMC5 around GFF162

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF160 and GFF161 are separated by 309 nucleotidesGFF161 and GFF162 are separated by 12 nucleotidesGFF162 and GFF163 overlap by 1 nucleotides GFF160 - Acetyl-coenzyme A synthetase, at 168,774 to 170,726 GFF160 GFF161 - hypothetical protein, at 171,036 to 171,407 GFF161 GFF162 - Tetraacyldisaccharide 4'-kinase, at 171,420 to 172,436 GFF162 GFF163 - 3-deoxy-D-manno-octulosonic acid transferase, at 172,436 to 173,731 GFF163 Position (kb) 171 172 173Strain fitness (log2 ratio) -3 -2 -1 0 1at 170.551 kb on + strandat 170.552 kb on - strandat 170.552 kb on - strandat 170.647 kb on + strandat 170.648 kb on - strandat 170.648 kb on - strandat 170.648 kb on - strandat 170.659 kb on + strandat 170.677 kb on + strandat 170.677 kb on + strandat 170.710 kb on + strandat 170.859 kb on + strandat 170.860 kb on - strandat 170.860 kb on - strandat 170.860 kb on - strandat 170.907 kb on + strandat 170.984 kb on - strandat 170.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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170,551 + -0.5
170,552 - +0.0
170,552 - -2.4
170,647 + -0.6
170,648 - -1.5
170,648 - -3.0
170,648 - -0.8
170,659 + -1.4
170,677 + -1.2
170,677 + -1.2
170,710 + -1.8
170,859 + +0.8
170,860 - +1.2
170,860 - +0.5
170,860 - +0.8
170,907 + +0.5
170,984 - +0.1
170,985 + -0.0

Or see this region's nucleotide sequence