Strain Fitness in Xanthobacter sp. DMC5 around GFF1619

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1618 and GFF1619 are separated by 449 nucleotidesGFF1619 and GFF1620 are separated by 110 nucleotides GFF1618 - hypothetical protein, at 265,903 to 266,676 GFF1618 GFF1619 - hypothetical protein, at 267,126 to 268,499 GFF1619 GFF1620 - hypothetical protein, at 268,610 to 269,170 GFF1620 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 266.224 kb on + strand, within GFF1618at 266.225 kb on - strand, within GFF1618at 266.225 kb on - strand, within GFF1618at 266.225 kb on - strand, within GFF1618at 266.231 kb on - strand, within GFF1618at 266.271 kb on - strand, within GFF1618at 266.271 kb on - strand, within GFF1618at 266.332 kb on + strand, within GFF1618at 266.335 kb on + strand, within GFF1618at 266.335 kb on + strand, within GFF1618at 266.335 kb on + strand, within GFF1618at 266.335 kb on + strand, within GFF1618at 266.336 kb on - strand, within GFF1618at 266.336 kb on - strand, within GFF1618at 266.356 kb on + strand, within GFF1618at 266.396 kb on - strand, within GFF1618at 266.397 kb on + strand, within GFF1618at 266.398 kb on - strand, within GFF1618at 266.398 kb on - strand, within GFF1618at 266.437 kb on + strand, within GFF1618at 266.437 kb on + strand, within GFF1618at 266.438 kb on - strand, within GFF1618at 266.484 kb on + strand, within GFF1618at 266.528 kb on - strand, within GFF1618at 266.545 kb on + strand, within GFF1618at 266.545 kb on + strand, within GFF1618at 266.602 kb on + strandat 266.603 kb on - strandat 266.806 kb on - strandat 266.884 kb on + strandat 266.885 kb on - strandat 266.964 kb on + strandat 266.969 kb on + strandat 266.969 kb on + strandat 266.970 kb on - strandat 267.177 kb on - strandat 267.177 kb on - strandat 267.213 kb on + strandat 267.214 kb on - strandat 267.214 kb on - strandat 267.220 kb on - strandat 267.370 kb on + strand, within GFF1619at 267.370 kb on + strand, within GFF1619at 267.371 kb on - strand, within GFF1619at 267.387 kb on + strand, within GFF1619at 267.451 kb on + strand, within GFF1619at 267.485 kb on - strand, within GFF1619at 267.503 kb on - strand, within GFF1619at 267.503 kb on - strand, within GFF1619at 267.503 kb on - strand, within GFF1619at 267.585 kb on + strand, within GFF1619at 267.585 kb on + strand, within GFF1619at 267.654 kb on + strand, within GFF1619at 267.654 kb on + strand, within GFF1619at 267.654 kb on + strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.752 kb on + strand, within GFF1619at 267.753 kb on - strand, within GFF1619at 267.753 kb on - strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 268.067 kb on + strand, within GFF1619at 268.068 kb on - strand, within GFF1619at 268.211 kb on + strand, within GFF1619at 268.211 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.267 kb on + strand, within GFF1619at 268.267 kb on + strand, within GFF1619at 268.268 kb on - strand, within GFF1619at 268.268 kb on - strand, within GFF1619at 268.384 kb on + strandat 268.384 kb on + strandat 268.385 kb on - strandat 268.385 kb on - strandat 268.385 kb on - strandat 268.447 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.532 kb on - strandat 268.583 kb on + strandat 268.591 kb on - strandat 268.605 kb on - strandat 268.656 kb on - strandat 268.670 kb on - strand, within GFF1620at 268.671 kb on + strand, within GFF1620at 268.671 kb on + strand, within GFF1620at 268.672 kb on - strand, within GFF1620at 268.675 kb on - strand, within GFF1620at 268.825 kb on - strand, within GFF1620at 268.827 kb on - strand, within GFF1620at 268.873 kb on + strand, within GFF1620at 268.873 kb on + strand, within GFF1620at 268.889 kb on + strand, within GFF1620at 268.889 kb on + strand, within GFF1620at 268.890 kb on - strand, within GFF1620at 268.890 kb on - strand, within GFF1620at 268.965 kb on - strand, within GFF1620at 269.102 kb on + strand, within GFF1620at 269.168 kb on + strandat 269.168 kb on + strandat 269.205 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.298 kb on - strandat 269.298 kb on - strandat 269.325 kb on + strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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266,224 + GFF1618 0.41 -0.4
266,225 - GFF1618 0.42 +0.1
266,225 - GFF1618 0.42 +0.4
266,225 - GFF1618 0.42 +0.9
266,231 - GFF1618 0.42 +0.4
266,271 - GFF1618 0.48 -0.1
266,271 - GFF1618 0.48 -0.3
266,332 + GFF1618 0.55 -0.1
266,335 + GFF1618 0.56 +0.3
266,335 + GFF1618 0.56 +0.7
266,335 + GFF1618 0.56 +1.4
266,335 + GFF1618 0.56 -0.7
266,336 - GFF1618 0.56 -0.2
266,336 - GFF1618 0.56 +0.3
266,356 + GFF1618 0.59 +1.3
266,396 - GFF1618 0.64 +2.3
266,397 + GFF1618 0.64 +0.6
266,398 - GFF1618 0.64 -0.8
266,398 - GFF1618 0.64 -0.6
266,437 + GFF1618 0.69 -0.4
266,437 + GFF1618 0.69 -0.8
266,438 - GFF1618 0.69 +1.2
266,484 + GFF1618 0.75 -0.3
266,528 - GFF1618 0.81 +0.9
266,545 + GFF1618 0.83 -0.8
266,545 + GFF1618 0.83 -0.6
266,602 + -1.7
266,603 - +0.9
266,806 - -0.3
266,884 + +1.2
266,885 - +0.9
266,964 + +1.0
266,969 + -1.3
266,969 + +0.5
266,970 - -0.8
267,177 - +0.9
267,177 - +0.0
267,213 + +0.2
267,214 - -0.9
267,214 - -1.9
267,220 - -0.0
267,370 + GFF1619 0.18 +0.1
267,370 + GFF1619 0.18 -0.4
267,371 - GFF1619 0.18 +0.2
267,387 + GFF1619 0.19 +0.2
267,451 + GFF1619 0.24 -0.1
267,485 - GFF1619 0.26 -0.3
267,503 - GFF1619 0.27 +1.6
267,503 - GFF1619 0.27 -0.9
267,503 - GFF1619 0.27 +0.5
267,585 + GFF1619 0.33 +0.3
267,585 + GFF1619 0.33 -2.0
267,654 + GFF1619 0.38 -0.8
267,654 + GFF1619 0.38 -0.0
267,654 + GFF1619 0.38 -1.1
267,715 - GFF1619 0.43 +0.6
267,715 - GFF1619 0.43 +0.2
267,715 - GFF1619 0.43 -0.3
267,752 + GFF1619 0.46 +0.3
267,753 - GFF1619 0.46 -1.0
267,753 - GFF1619 0.46 -0.3
267,978 + GFF1619 0.62 -0.0
267,978 + GFF1619 0.62 +1.0
267,978 + GFF1619 0.62 +0.2
268,067 + GFF1619 0.68 +0.7
268,068 - GFF1619 0.69 +0.8
268,211 + GFF1619 0.79 -0.6
268,211 + GFF1619 0.79 -0.2
268,245 + GFF1619 0.81 -0.3
268,245 + GFF1619 0.81 +0.7
268,245 + GFF1619 0.81 +1.0
268,245 + GFF1619 0.81 -0.9
268,246 - GFF1619 0.82 -1.7
268,246 - GFF1619 0.82 +0.6
268,246 - GFF1619 0.82 +1.1
268,246 - GFF1619 0.82 -0.7
268,246 - GFF1619 0.82 -0.0
268,267 + GFF1619 0.83 -0.5
268,267 + GFF1619 0.83 -0.5
268,268 - GFF1619 0.83 -0.3
268,268 - GFF1619 0.83 +0.7
268,384 + -0.9
268,384 + -0.1
268,385 - +0.5
268,385 - -0.1
268,385 - +0.3
268,447 + -0.1
268,531 + +0.3
268,531 + -0.6
268,531 + +1.0
268,531 + +1.0
268,531 + +0.7
268,532 - -1.0
268,583 + +0.1
268,591 - +1.3
268,605 - -0.0
268,656 - +0.4
268,670 - GFF1620 0.11 -0.0
268,671 + GFF1620 0.11 -0.6
268,671 + GFF1620 0.11 +0.8
268,672 - GFF1620 0.11 -0.1
268,675 - GFF1620 0.12 -2.0
268,825 - GFF1620 0.38 +1.7
268,827 - GFF1620 0.39 -0.6
268,873 + GFF1620 0.47 +1.2
268,873 + GFF1620 0.47 +0.3
268,889 + GFF1620 0.50 +1.1
268,889 + GFF1620 0.50 -0.6
268,890 - GFF1620 0.50 -1.3
268,890 - GFF1620 0.50 +2.6
268,965 - GFF1620 0.63 +0.0
269,102 + GFF1620 0.88 +1.1
269,168 + -0.0
269,168 + +0.0
269,205 + -1.1
269,297 + -1.2
269,297 + -0.3
269,298 - +0.1
269,298 - +0.1
269,325 + -1.0
269,326 - -1.4
269,326 - -0.3
269,326 - -1.3
269,326 - -0.8
269,326 - +0.8
269,468 - +0.2

Or see this region's nucleotide sequence