Strain Fitness in Xanthobacter sp. DMC5 around GFF1610

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1608 and GFF1609 are separated by 135 nucleotidesGFF1609 and GFF1610 are separated by 57 nucleotidesGFF1610 and GFF1611 are separated by 44 nucleotides GFF1608 - Alcohol dehydrogenase [acceptor], at 258,400 to 260,055 GFF1608 GFF1609 - HTH-type transcriptional repressor RspR, at 260,191 to 260,922 GFF1609 GFF1610 - 2-hydroxy-3-oxopropionate reductase, at 260,980 to 261,927 GFF1610 GFF1611 - hypothetical protein, at 261,972 to 262,796 GFF1611 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 260.062 kb on - strandat 260.420 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.653 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.871 kb on + strandat 260.871 kb on + strandat 260.872 kb on - strandat 260.872 kb on - strandat 260.920 kb on + strandat 260.921 kb on - strandat 260.956 kb on + strandat 261.104 kb on + strand, within GFF1610at 261.104 kb on + strand, within GFF1610at 261.104 kb on + strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.135 kb on + strand, within GFF1610at 261.568 kb on + strand, within GFF1610at 261.568 kb on + strand, within GFF1610at 261.569 kb on - strand, within GFF1610at 261.569 kb on - strand, within GFF1610at 261.652 kb on + strand, within GFF1610at 261.682 kb on + strand, within GFF1610at 261.682 kb on + strand, within GFF1610at 261.683 kb on - strand, within GFF1610at 261.683 kb on - strand, within GFF1610at 261.725 kb on - strand, within GFF1610at 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.880 kb on + strandat 261.880 kb on + strandat 261.881 kb on - strandat 261.982 kb on - strandat 262.039 kb on + strandat 262.105 kb on - strand, within GFF1611at 262.180 kb on + strand, within GFF1611at 262.213 kb on + strand, within GFF1611at 262.214 kb on - strand, within GFF1611at 262.333 kb on + strand, within GFF1611at 262.334 kb on - strand, within GFF1611at 262.385 kb on + strand, within GFF1611at 262.385 kb on + strand, within GFF1611at 262.385 kb on + strand, within GFF1611at 262.385 kb on + strand, within GFF1611at 262.386 kb on - strand, within GFF1611at 262.386 kb on - strand, within GFF1611at 262.386 kb on - strand, within GFF1611at 262.386 kb on - strand, within GFF1611at 262.486 kb on + strand, within GFF1611at 262.486 kb on + strand, within GFF1611at 262.486 kb on + strand, within GFF1611at 262.486 kb on + strand, within GFF1611at 262.487 kb on - strand, within GFF1611at 262.487 kb on - strand, within GFF1611at 262.487 kb on - strand, within GFF1611at 262.487 kb on - strand, within GFF1611at 262.487 kb on - strand, within GFF1611at 262.511 kb on + strand, within GFF1611at 262.660 kb on + strand, within GFF1611at 262.660 kb on + strand, within GFF1611at 262.661 kb on - strand, within GFF1611at 262.661 kb on - strand, within GFF1611at 262.810 kb on + strandat 262.810 kb on + strandat 262.810 kb on + strandat 262.810 kb on + strandat 262.811 kb on - strandat 262.811 kb on - strandat 262.811 kb on - strandat 262.815 kb on - strandat 262.815 kb on - strandat 262.815 kb on - strandat 262.855 kb on + strandat 262.867 kb on - strandat 262.900 kb on - strandat 262.900 kb on - strandat 262.900 kb on - strandat 262.914 kb on - strandat 262.914 kb on - strandat 262.923 kb on + strandat 262.923 kb on + strandat 262.923 kb on + strandat 262.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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260,062 - -1.0
260,420 + GFF1609 0.31 -0.8
260,429 + GFF1609 0.33 -1.4
260,429 + GFF1609 0.33 -0.9
260,429 + GFF1609 0.33 -1.2
260,429 + GFF1609 0.33 +0.6
260,430 - GFF1609 0.33 -0.8
260,430 - GFF1609 0.33 -0.0
260,512 + GFF1609 0.44 -0.3
260,512 + GFF1609 0.44 -0.3
260,512 + GFF1609 0.44 -2.8
260,512 + GFF1609 0.44 +0.0
260,512 + GFF1609 0.44 -0.5
260,512 + GFF1609 0.44 +0.6
260,513 - GFF1609 0.44 +0.7
260,513 - GFF1609 0.44 -0.6
260,513 - GFF1609 0.44 +0.1
260,646 + GFF1609 0.62 +0.7
260,646 + GFF1609 0.62 -0.9
260,646 + GFF1609 0.62 -0.8
260,646 + GFF1609 0.62 -0.2
260,647 - GFF1609 0.62 -1.1
260,647 - GFF1609 0.62 +0.0
260,647 - GFF1609 0.62 +0.3
260,652 + GFF1609 0.63 +0.1
260,652 + GFF1609 0.63 -0.0
260,653 - GFF1609 0.63 +0.5
260,672 - GFF1609 0.66 -0.3
260,672 - GFF1609 0.66 -0.0
260,871 + -1.3
260,871 + -1.6
260,872 - +0.2
260,872 - +0.4
260,920 + +0.2
260,921 - +0.1
260,956 + +0.5
261,104 + GFF1610 0.13 -0.4
261,104 + GFF1610 0.13 -0.5
261,104 + GFF1610 0.13 -0.5
261,105 - GFF1610 0.13 -0.0
261,105 - GFF1610 0.13 +0.5
261,105 - GFF1610 0.13 -1.0
261,105 - GFF1610 0.13 -0.6
261,135 + GFF1610 0.16 -0.4
261,568 + GFF1610 0.62 -0.8
261,568 + GFF1610 0.62 +0.7
261,569 - GFF1610 0.62 +2.6
261,569 - GFF1610 0.62 +1.0
261,652 + GFF1610 0.71 -2.0
261,682 + GFF1610 0.74 -1.1
261,682 + GFF1610 0.74 -0.1
261,683 - GFF1610 0.74 +0.9
261,683 - GFF1610 0.74 -0.4
261,725 - GFF1610 0.79 -0.9
261,849 + -0.7
261,849 + -1.0
261,849 + -0.4
261,849 + +0.1
261,849 + +0.9
261,849 + +0.4
261,849 + -0.6
261,849 + +1.1
261,850 - -2.1
261,850 - -2.2
261,850 - -0.4
261,850 - +0.3
261,880 + +0.1
261,880 + -0.5
261,881 - -0.8
261,982 - +0.1
262,039 + +1.0
262,105 - GFF1611 0.16 +0.7
262,180 + GFF1611 0.25 -1.3
262,213 + GFF1611 0.29 +0.2
262,214 - GFF1611 0.29 -0.3
262,333 + GFF1611 0.44 -0.6
262,334 - GFF1611 0.44 -0.1
262,385 + GFF1611 0.50 +0.6
262,385 + GFF1611 0.50 +1.0
262,385 + GFF1611 0.50 -0.5
262,385 + GFF1611 0.50 -1.2
262,386 - GFF1611 0.50 +0.7
262,386 - GFF1611 0.50 -1.3
262,386 - GFF1611 0.50 -0.6
262,386 - GFF1611 0.50 -0.5
262,486 + GFF1611 0.62 +1.0
262,486 + GFF1611 0.62 -0.8
262,486 + GFF1611 0.62 -0.5
262,486 + GFF1611 0.62 -0.5
262,487 - GFF1611 0.62 -0.3
262,487 - GFF1611 0.62 -0.0
262,487 - GFF1611 0.62 -0.9
262,487 - GFF1611 0.62 -0.4
262,487 - GFF1611 0.62 +1.3
262,511 + GFF1611 0.65 +0.9
262,660 + GFF1611 0.83 -0.6
262,660 + GFF1611 0.83 -0.7
262,661 - GFF1611 0.84 +0.3
262,661 - GFF1611 0.84 -0.1
262,810 + -1.3
262,810 + -0.9
262,810 + -0.1
262,810 + -0.7
262,811 - -0.4
262,811 - +0.2
262,811 - -0.5
262,815 - +1.4
262,815 - +0.3
262,815 - +1.3
262,855 + -0.5
262,867 - +0.8
262,900 - +1.0
262,900 - +0.6
262,900 - -0.6
262,914 - +1.5
262,914 - -0.8
262,923 + -0.9
262,923 + -1.5
262,923 + -0.7
262,924 - -1.0

Or see this region's nucleotide sequence