Strain Fitness in Xanthobacter sp. DMC5 around GFF1605

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1603 and GFF1604 overlap by 1 nucleotidesGFF1604 and GFF1605 are separated by 17 nucleotidesGFF1605 and GFF1606 overlap by 62 nucleotidesGFF1606 and GFF1607 are separated by 68 nucleotides GFF1603 - hypothetical protein, at 253,695 to 254,663 GFF1603 GFF1604 - High-affinity branched-chain amino acid transport system permease protein LivH, at 254,663 to 255,541 GFF1604 GFF1605 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 255,559 to 256,320 GFF1605 GFF1606 - Ribose import ATP-binding protein RbsA, at 256,259 to 257,020 GFF1606 GFF1607 - hypothetical protein, at 257,089 to 258,309 GFF1607 Position (kb) 255 256 257Strain fitness (log2 ratio) -2 -1 0 1at 254.717 kb on - strandat 254.735 kb on - strandat 254.752 kb on - strand, within GFF1604at 254.752 kb on - strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.893 kb on - strand, within GFF1604at 254.947 kb on - strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.201 kb on - strand, within GFF1604at 255.246 kb on + strand, within GFF1604at 255.247 kb on - strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.345 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.474 kb on + strandat 255.474 kb on + strandat 255.474 kb on + strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.476 kb on + strandat 255.488 kb on + strandat 255.513 kb on + strandat 255.513 kb on + strandat 255.514 kb on - strandat 255.572 kb on + strandat 255.573 kb on - strandat 255.650 kb on + strand, within GFF1605at 255.650 kb on + strand, within GFF1605at 255.651 kb on - strand, within GFF1605at 255.927 kb on + strand, within GFF1605at 255.928 kb on - strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 256.013 kb on + strand, within GFF1605at 256.014 kb on - strand, within GFF1605at 256.092 kb on - strand, within GFF1605at 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.321 kb on - strandat 256.582 kb on + strand, within GFF1606at 256.583 kb on - strand, within GFF1606at 256.617 kb on + strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.717 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.859 kb on + strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 257.026 kb on - strandat 257.071 kb on + strandat 257.166 kb on - strandat 257.213 kb on + strand, within GFF1607at 257.213 kb on + strand, within GFF1607at 257.214 kb on - strand, within GFF1607at 257.294 kb on + strand, within GFF1607

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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254,717 - +0.7
254,735 - -0.3
254,752 - GFF1604 0.10 -0.3
254,752 - GFF1604 0.10 -2.6
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 +0.1
254,756 + GFF1604 0.11 +1.0
254,756 + GFF1604 0.11 +1.0
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 -0.0
254,756 + GFF1604 0.11 +0.2
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 +1.4
254,757 - GFF1604 0.11 +0.3
254,757 - GFF1604 0.11 +0.1
254,757 - GFF1604 0.11 +0.6
254,892 + GFF1604 0.26 -0.1
254,892 + GFF1604 0.26 -0.3
254,892 + GFF1604 0.26 +0.9
254,893 - GFF1604 0.26 +1.0
254,947 - GFF1604 0.32 -0.3
255,024 + GFF1604 0.41 +0.6
255,024 + GFF1604 0.41 -1.1
255,024 + GFF1604 0.41 -0.1
255,024 + GFF1604 0.41 +1.6
255,106 - GFF1604 0.50 -0.0
255,106 - GFF1604 0.50 -0.0
255,106 - GFF1604 0.50 -2.6
255,106 - GFF1604 0.50 -1.6
255,106 - GFF1604 0.50 -0.3
255,200 + GFF1604 0.61 -0.2
255,200 + GFF1604 0.61 -0.6
255,200 + GFF1604 0.61 -2.3
255,201 - GFF1604 0.61 -0.0
255,246 + GFF1604 0.66 -1.0
255,247 - GFF1604 0.66 -0.1
255,264 + GFF1604 0.68 +0.4
255,264 + GFF1604 0.68 -0.4
255,265 - GFF1604 0.68 -0.1
255,265 - GFF1604 0.68 +0.1
255,345 + GFF1604 0.78 +0.7
255,360 + GFF1604 0.79 +0.4
255,360 + GFF1604 0.79 +0.5
255,361 - GFF1604 0.79 +0.7
255,361 - GFF1604 0.79 +0.2
255,474 + +0.5
255,474 + -1.5
255,474 + +0.5
255,475 - +0.2
255,475 - -0.1
255,475 - -0.0
255,476 + -0.6
255,488 + +0.2
255,513 + -1.7
255,513 + -0.9
255,514 - +0.6
255,572 + -0.5
255,573 - -0.9
255,650 + GFF1605 0.12 -2.2
255,650 + GFF1605 0.12 +1.4
255,651 - GFF1605 0.12 -0.4
255,927 + GFF1605 0.48 +0.6
255,928 - GFF1605 0.48 +0.2
255,989 + GFF1605 0.56 -0.5
255,989 + GFF1605 0.56 -0.4
255,990 - GFF1605 0.57 -0.2
255,990 - GFF1605 0.57 -1.3
256,013 + GFF1605 0.60 -0.1
256,014 - GFF1605 0.60 -0.3
256,092 - GFF1605 0.70 +0.5
256,281 + -0.4
256,281 + +0.4
256,281 + -0.5
256,281 + +1.6
256,282 - +0.4
256,282 - -1.7
256,282 - -1.0
256,282 - +0.9
256,282 - +0.5
256,282 - -0.8
256,321 - -1.5
256,582 + GFF1606 0.42 -0.9
256,583 - GFF1606 0.43 +0.1
256,617 + GFF1606 0.47 +0.3
256,618 - GFF1606 0.47 -0.4
256,618 - GFF1606 0.47 +0.6
256,717 - GFF1606 0.60 -0.5
256,808 - GFF1606 0.72 +1.3
256,808 - GFF1606 0.72 +1.5
256,859 + GFF1606 0.79 -1.4
256,860 - GFF1606 0.79 +1.4
256,860 - GFF1606 0.79 -0.4
256,860 - GFF1606 0.79 -0.4
256,860 - GFF1606 0.79 -2.0
256,934 - GFF1606 0.89 +0.7
256,934 - GFF1606 0.89 -0.8
257,026 - +0.7
257,071 + +0.7
257,166 - +1.6
257,213 + GFF1607 0.10 +0.8
257,213 + GFF1607 0.10 -1.1
257,214 - GFF1607 0.10 +0.3
257,294 + GFF1607 0.17 -1.9

Or see this region's nucleotide sequence