Strain Fitness in Xanthobacter sp. DMC5 around GFF1603

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1602 and GFF1603 are separated by 25 nucleotidesGFF1603 and GFF1604 overlap by 1 nucleotidesGFF1604 and GFF1605 are separated by 17 nucleotides GFF1602 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 252,230 to 253,669 GFF1602 GFF1603 - hypothetical protein, at 253,695 to 254,663 GFF1603 GFF1604 - High-affinity branched-chain amino acid transport system permease protein LivH, at 254,663 to 255,541 GFF1604 GFF1605 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 255,559 to 256,320 GFF1605 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 252.729 kb on + strand, within GFF1602at 252.830 kb on - strand, within GFF1602at 252.870 kb on - strand, within GFF1602at 252.932 kb on + strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.938 kb on - strand, within GFF1602at 253.016 kb on + strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.060 kb on + strand, within GFF1602at 253.061 kb on - strand, within GFF1602at 253.061 kb on - strand, within GFF1602at 253.249 kb on + strand, within GFF1602at 253.249 kb on + strand, within GFF1602at 253.250 kb on - strand, within GFF1602at 253.250 kb on - strand, within GFF1602at 253.299 kb on + strand, within GFF1602at 253.300 kb on - strand, within GFF1602at 253.324 kb on - strand, within GFF1602at 253.324 kb on - strand, within GFF1602at 253.494 kb on + strand, within GFF1602at 253.650 kb on + strandat 253.651 kb on - strandat 253.657 kb on - strandat 253.657 kb on - strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.697 kb on - strandat 253.719 kb on + strandat 253.720 kb on - strandat 253.961 kb on + strand, within GFF1603at 253.961 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.260 kb on + strand, within GFF1603at 254.261 kb on - strand, within GFF1603at 254.405 kb on + strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.413 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.426 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.546 kb on - strand, within GFF1603at 254.717 kb on - strandat 254.735 kb on - strandat 254.752 kb on - strand, within GFF1604at 254.752 kb on - strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.893 kb on - strand, within GFF1604at 254.947 kb on - strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.201 kb on - strand, within GFF1604at 255.246 kb on + strand, within GFF1604at 255.247 kb on - strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.345 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.474 kb on + strandat 255.474 kb on + strandat 255.474 kb on + strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.476 kb on + strandat 255.488 kb on + strandat 255.513 kb on + strandat 255.513 kb on + strandat 255.514 kb on - strandat 255.572 kb on + strandat 255.573 kb on - strandat 255.650 kb on + strand, within GFF1605at 255.650 kb on + strand, within GFF1605at 255.651 kb on - strand, within GFF1605

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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252,729 + GFF1602 0.35 +0.3
252,830 - GFF1602 0.42 -0.9
252,870 - GFF1602 0.44 -0.4
252,932 + GFF1602 0.49 -0.5
252,933 - GFF1602 0.49 +0.5
252,933 - GFF1602 0.49 -0.3
252,937 + GFF1602 0.49 +0.6
252,937 + GFF1602 0.49 -0.4
252,937 + GFF1602 0.49 -0.2
252,937 + GFF1602 0.49 +0.0
252,938 - GFF1602 0.49 -0.3
253,016 + GFF1602 0.55 +0.4
253,017 - GFF1602 0.55 +1.1
253,017 - GFF1602 0.55 +0.5
253,017 - GFF1602 0.55 +0.9
253,017 - GFF1602 0.55 -1.1
253,017 - GFF1602 0.55 +0.6
253,060 + GFF1602 0.58 +1.2
253,061 - GFF1602 0.58 -0.5
253,061 - GFF1602 0.58 -0.6
253,249 + GFF1602 0.71 +1.1
253,249 + GFF1602 0.71 +0.7
253,250 - GFF1602 0.71 -2.6
253,250 - GFF1602 0.71 +0.5
253,299 + GFF1602 0.74 +0.4
253,300 - GFF1602 0.74 -0.1
253,324 - GFF1602 0.76 -1.6
253,324 - GFF1602 0.76 +0.9
253,494 + GFF1602 0.88 -0.3
253,650 + -0.6
253,651 - +0.2
253,657 - -0.0
253,657 - +0.1
253,676 + -1.2
253,676 + +1.0
253,676 + -0.5
253,676 + +0.2
253,677 - +0.8
253,677 - -0.4
253,677 - -0.2
253,677 - -0.5
253,677 - -0.6
253,677 - -0.3
253,697 - +0.8
253,719 + -0.0
253,720 - +0.1
253,961 + GFF1603 0.27 -1.1
253,961 + GFF1603 0.27 +0.4
254,017 + GFF1603 0.33 -0.2
254,017 + GFF1603 0.33 +0.2
254,017 + GFF1603 0.33 +0.8
254,017 + GFF1603 0.33 -0.1
254,017 + GFF1603 0.33 -0.3
254,017 + GFF1603 0.33 -0.1
254,018 - GFF1603 0.33 +0.5
254,018 - GFF1603 0.33 +1.1
254,018 - GFF1603 0.33 +0.7
254,018 - GFF1603 0.33 +0.9
254,018 - GFF1603 0.33 +0.9
254,032 + GFF1603 0.35 +1.3
254,032 + GFF1603 0.35 +1.9
254,260 + GFF1603 0.58 +0.3
254,261 - GFF1603 0.58 +0.6
254,405 + GFF1603 0.73 +0.0
254,406 - GFF1603 0.73 +1.1
254,406 - GFF1603 0.73 -0.4
254,413 + GFF1603 0.74 -0.0
254,423 + GFF1603 0.75 -0.8
254,423 + GFF1603 0.75 +0.3
254,423 + GFF1603 0.75 -0.8
254,424 - GFF1603 0.75 +1.6
254,424 - GFF1603 0.75 -0.1
254,424 - GFF1603 0.75 +1.3
254,425 + GFF1603 0.75 +0.4
254,425 + GFF1603 0.75 -0.8
254,425 + GFF1603 0.75 -0.4
254,426 - GFF1603 0.75 -1.2
254,477 - GFF1603 0.81 -0.9
254,477 - GFF1603 0.81 -0.0
254,515 + GFF1603 0.85 -0.8
254,515 + GFF1603 0.85 +0.3
254,515 + GFF1603 0.85 -0.0
254,515 + GFF1603 0.85 +0.4
254,546 - GFF1603 0.88 -0.0
254,717 - +0.7
254,735 - -0.3
254,752 - GFF1604 0.10 -0.3
254,752 - GFF1604 0.10 -2.6
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 +0.1
254,756 + GFF1604 0.11 +1.0
254,756 + GFF1604 0.11 +1.0
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 -0.0
254,756 + GFF1604 0.11 +0.2
254,756 + GFF1604 0.11 -0.1
254,756 + GFF1604 0.11 +1.4
254,757 - GFF1604 0.11 +0.3
254,757 - GFF1604 0.11 +0.1
254,757 - GFF1604 0.11 +0.6
254,892 + GFF1604 0.26 -0.1
254,892 + GFF1604 0.26 -0.3
254,892 + GFF1604 0.26 +0.9
254,893 - GFF1604 0.26 +1.0
254,947 - GFF1604 0.32 -0.3
255,024 + GFF1604 0.41 +0.6
255,024 + GFF1604 0.41 -1.1
255,024 + GFF1604 0.41 -0.1
255,024 + GFF1604 0.41 +1.6
255,106 - GFF1604 0.50 -0.0
255,106 - GFF1604 0.50 -0.0
255,106 - GFF1604 0.50 -2.6
255,106 - GFF1604 0.50 -1.6
255,106 - GFF1604 0.50 -0.3
255,200 + GFF1604 0.61 -0.2
255,200 + GFF1604 0.61 -0.6
255,200 + GFF1604 0.61 -2.3
255,201 - GFF1604 0.61 -0.0
255,246 + GFF1604 0.66 -1.0
255,247 - GFF1604 0.66 -0.1
255,264 + GFF1604 0.68 +0.4
255,264 + GFF1604 0.68 -0.4
255,265 - GFF1604 0.68 -0.1
255,265 - GFF1604 0.68 +0.1
255,345 + GFF1604 0.78 +0.7
255,360 + GFF1604 0.79 +0.4
255,360 + GFF1604 0.79 +0.5
255,361 - GFF1604 0.79 +0.7
255,361 - GFF1604 0.79 +0.2
255,474 + +0.5
255,474 + -1.5
255,474 + +0.5
255,475 - +0.2
255,475 - -0.1
255,475 - -0.0
255,476 + -0.6
255,488 + +0.2
255,513 + -1.7
255,513 + -0.9
255,514 - +0.6
255,572 + -0.5
255,573 - -0.9
255,650 + GFF1605 0.12 -2.2
255,650 + GFF1605 0.12 +1.4
255,651 - GFF1605 0.12 -0.4

Or see this region's nucleotide sequence