Strain Fitness in Xanthobacter sp. DMC5 around GFF1601

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1599 and GFF1600 overlap by 8 nucleotidesGFF1600 and GFF1601 are separated by 54 nucleotidesGFF1601 and GFF1602 are separated by 42 nucleotides GFF1599 - hypothetical protein, at 249,496 to 249,891 GFF1599 GFF1600 - 2-(hydroxymethyl)glutarate dehydrogenase, at 249,884 to 250,780 GFF1600 GFF1601 - hypothetical protein, at 250,835 to 252,187 GFF1601 GFF1602 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 252,230 to 253,669 GFF1602 Position (kb) 250 251 252 253Strain fitness (log2 ratio) -2 -1 0 1at 249.974 kb on + strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.751 kb on + strandat 250.751 kb on + strandat 251.168 kb on - strand, within GFF1601at 251.168 kb on - strand, within GFF1601at 251.170 kb on + strand, within GFF1601at 251.170 kb on + strand, within GFF1601at 251.171 kb on - strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.601 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601at 251.801 kb on + strand, within GFF1601at 251.915 kb on + strand, within GFF1601at 251.915 kb on + strand, within GFF1601at 252.004 kb on + strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.005 kb on - strand, within GFF1601at 252.101 kb on + strandat 252.300 kb on + strandat 252.301 kb on - strandat 252.301 kb on - strandat 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.429 kb on + strand, within GFF1602at 252.576 kb on + strand, within GFF1602at 252.577 kb on - strand, within GFF1602at 252.729 kb on + strand, within GFF1602at 252.830 kb on - strand, within GFF1602at 252.870 kb on - strand, within GFF1602at 252.932 kb on + strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.933 kb on - strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.937 kb on + strand, within GFF1602at 252.938 kb on - strand, within GFF1602at 253.016 kb on + strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.017 kb on - strand, within GFF1602at 253.060 kb on + strand, within GFF1602at 253.061 kb on - strand, within GFF1602at 253.061 kb on - strand, within GFF1602

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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249,974 + GFF1600 0.10 +0.6
249,975 - GFF1600 0.10 -0.1
249,975 - GFF1600 0.10 +1.3
250,241 - GFF1600 0.40 +0.8
250,241 - GFF1600 0.40 -0.6
250,241 - GFF1600 0.40 +1.3
250,241 - GFF1600 0.40 +0.7
250,241 - GFF1600 0.40 +0.1
250,241 - GFF1600 0.40 +0.5
250,424 + GFF1600 0.60 -0.2
250,424 + GFF1600 0.60 +0.3
250,424 + GFF1600 0.60 +0.3
250,424 + GFF1600 0.60 +0.4
250,425 - GFF1600 0.60 -0.3
250,425 - GFF1600 0.60 +0.1
250,425 - GFF1600 0.60 +0.1
250,583 + GFF1600 0.78 +0.5
250,583 + GFF1600 0.78 +0.7
250,583 + GFF1600 0.78 -0.4
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 +0.3
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 -0.7
250,584 - GFF1600 0.78 -0.1
250,584 - GFF1600 0.78 -0.3
250,584 - GFF1600 0.78 -1.2
250,584 - GFF1600 0.78 +1.2
250,584 - GFF1600 0.78 -0.5
250,584 - GFF1600 0.78 -0.3
250,751 + -0.6
250,751 + +1.0
251,168 - GFF1601 0.25 -0.9
251,168 - GFF1601 0.25 +1.0
251,170 + GFF1601 0.25 +0.7
251,170 + GFF1601 0.25 -0.9
251,171 - GFF1601 0.25 +1.5
251,385 + GFF1601 0.41 -0.7
251,385 + GFF1601 0.41 -0.3
251,385 + GFF1601 0.41 +0.4
251,386 - GFF1601 0.41 -1.6
251,386 - GFF1601 0.41 +0.9
251,386 - GFF1601 0.41 -1.9
251,386 - GFF1601 0.41 +0.5
251,386 - GFF1601 0.41 +0.3
251,386 - GFF1601 0.41 -0.4
251,487 - GFF1601 0.48 -0.9
251,487 - GFF1601 0.48 +0.6
251,487 - GFF1601 0.48 +1.7
251,534 + GFF1601 0.52 +0.5
251,534 + GFF1601 0.52 -0.6
251,534 + GFF1601 0.52 -0.6
251,601 - GFF1601 0.57 -1.4
251,734 - GFF1601 0.66 -0.4
251,734 - GFF1601 0.66 +0.9
251,801 + GFF1601 0.71 -0.2
251,915 + GFF1601 0.80 +1.0
251,915 + GFF1601 0.80 +1.0
252,004 + GFF1601 0.86 -0.6
252,005 - GFF1601 0.86 -0.4
252,005 - GFF1601 0.86 -0.8
252,005 - GFF1601 0.86 -0.4
252,005 - GFF1601 0.86 +0.6
252,101 + -0.6
252,300 + +0.9
252,301 - -0.0
252,301 - +0.8
252,429 + GFF1602 0.14 -0.1
252,429 + GFF1602 0.14 -0.4
252,429 + GFF1602 0.14 +0.1
252,429 + GFF1602 0.14 +0.1
252,429 + GFF1602 0.14 +0.4
252,429 + GFF1602 0.14 +1.0
252,429 + GFF1602 0.14 -0.0
252,576 + GFF1602 0.24 +0.7
252,577 - GFF1602 0.24 +1.1
252,729 + GFF1602 0.35 +0.3
252,830 - GFF1602 0.42 -0.9
252,870 - GFF1602 0.44 -0.4
252,932 + GFF1602 0.49 -0.5
252,933 - GFF1602 0.49 +0.5
252,933 - GFF1602 0.49 -0.3
252,937 + GFF1602 0.49 +0.6
252,937 + GFF1602 0.49 -0.4
252,937 + GFF1602 0.49 -0.2
252,937 + GFF1602 0.49 +0.0
252,938 - GFF1602 0.49 -0.3
253,016 + GFF1602 0.55 +0.4
253,017 - GFF1602 0.55 +1.1
253,017 - GFF1602 0.55 +0.5
253,017 - GFF1602 0.55 +0.9
253,017 - GFF1602 0.55 -1.1
253,017 - GFF1602 0.55 +0.6
253,060 + GFF1602 0.58 +1.2
253,061 - GFF1602 0.58 -0.5
253,061 - GFF1602 0.58 -0.6

Or see this region's nucleotide sequence