Strain Fitness in Xanthobacter sp. DMC5 around GFF1600

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1598 and GFF1599 are separated by 188 nucleotidesGFF1599 and GFF1600 overlap by 8 nucleotidesGFF1600 and GFF1601 are separated by 54 nucleotides GFF1598 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, at 248,432 to 249,307 GFF1598 GFF1599 - hypothetical protein, at 249,496 to 249,891 GFF1599 GFF1600 - 2-(hydroxymethyl)glutarate dehydrogenase, at 249,884 to 250,780 GFF1600 GFF1601 - hypothetical protein, at 250,835 to 252,187 GFF1601 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1at 248.963 kb on + strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.964 kb on - strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.038 kb on - strand, within GFF1598at 249.105 kb on + strand, within GFF1598at 249.270 kb on + strandat 249.270 kb on + strandat 249.409 kb on - strandat 249.438 kb on - strandat 249.438 kb on - strandat 249.462 kb on - strandat 249.474 kb on + strandat 249.475 kb on - strandat 249.475 kb on - strandat 249.495 kb on + strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.571 kb on + strand, within GFF1599at 249.571 kb on + strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.797 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.974 kb on + strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.751 kb on + strandat 250.751 kb on + strandat 251.168 kb on - strand, within GFF1601at 251.168 kb on - strand, within GFF1601at 251.170 kb on + strand, within GFF1601at 251.170 kb on + strand, within GFF1601at 251.171 kb on - strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.385 kb on + strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.386 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.487 kb on - strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.534 kb on + strand, within GFF1601at 251.601 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601at 251.734 kb on - strand, within GFF1601

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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248,963 + GFF1598 0.61 -0.0
248,963 + GFF1598 0.61 -0.1
248,964 - GFF1598 0.61 +0.7
249,037 + GFF1598 0.69 -0.6
249,037 + GFF1598 0.69 +0.1
249,038 - GFF1598 0.69 +0.7
249,105 + GFF1598 0.77 +0.9
249,270 + +1.4
249,270 + +0.5
249,409 - +0.4
249,438 - -0.9
249,438 - -1.9
249,462 - +0.2
249,474 + +1.1
249,475 - -1.6
249,475 - -0.4
249,495 + -0.5
249,496 - -0.4
249,496 - -0.0
249,496 - -0.9
249,571 + GFF1599 0.19 -0.6
249,571 + GFF1599 0.19 -0.3
249,572 - GFF1599 0.19 -0.2
249,572 - GFF1599 0.19 +0.3
249,572 - GFF1599 0.19 -0.4
249,572 - GFF1599 0.19 +0.0
249,797 + GFF1599 0.76 -2.1
249,817 + GFF1599 0.81 -0.6
249,817 + GFF1599 0.81 -0.3
249,817 + GFF1599 0.81 +0.1
249,817 + GFF1599 0.81 -0.6
249,818 - GFF1599 0.81 +0.7
249,818 - GFF1599 0.81 -0.9
249,818 - GFF1599 0.81 -0.3
249,818 - GFF1599 0.81 -0.3
249,818 - GFF1599 0.81 +1.5
249,818 - GFF1599 0.81 -0.1
249,818 - GFF1599 0.81 -0.0
249,818 - GFF1599 0.81 +0.4
249,974 + GFF1600 0.10 +0.6
249,975 - GFF1600 0.10 -0.1
249,975 - GFF1600 0.10 +1.3
250,241 - GFF1600 0.40 +0.8
250,241 - GFF1600 0.40 -0.6
250,241 - GFF1600 0.40 +1.3
250,241 - GFF1600 0.40 +0.7
250,241 - GFF1600 0.40 +0.1
250,241 - GFF1600 0.40 +0.5
250,424 + GFF1600 0.60 -0.2
250,424 + GFF1600 0.60 +0.3
250,424 + GFF1600 0.60 +0.3
250,424 + GFF1600 0.60 +0.4
250,425 - GFF1600 0.60 -0.3
250,425 - GFF1600 0.60 +0.1
250,425 - GFF1600 0.60 +0.1
250,583 + GFF1600 0.78 +0.5
250,583 + GFF1600 0.78 +0.7
250,583 + GFF1600 0.78 -0.4
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 +0.3
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 -0.7
250,584 - GFF1600 0.78 -0.1
250,584 - GFF1600 0.78 -0.3
250,584 - GFF1600 0.78 -1.2
250,584 - GFF1600 0.78 +1.2
250,584 - GFF1600 0.78 -0.5
250,584 - GFF1600 0.78 -0.3
250,751 + -0.6
250,751 + +1.0
251,168 - GFF1601 0.25 -0.9
251,168 - GFF1601 0.25 +1.0
251,170 + GFF1601 0.25 +0.7
251,170 + GFF1601 0.25 -0.9
251,171 - GFF1601 0.25 +1.5
251,385 + GFF1601 0.41 -0.7
251,385 + GFF1601 0.41 -0.3
251,385 + GFF1601 0.41 +0.4
251,386 - GFF1601 0.41 -1.6
251,386 - GFF1601 0.41 +0.9
251,386 - GFF1601 0.41 -1.9
251,386 - GFF1601 0.41 +0.5
251,386 - GFF1601 0.41 +0.3
251,386 - GFF1601 0.41 -0.4
251,487 - GFF1601 0.48 -0.9
251,487 - GFF1601 0.48 +0.6
251,487 - GFF1601 0.48 +1.7
251,534 + GFF1601 0.52 +0.5
251,534 + GFF1601 0.52 -0.6
251,534 + GFF1601 0.52 -0.6
251,601 - GFF1601 0.57 -1.4
251,734 - GFF1601 0.66 -0.4
251,734 - GFF1601 0.66 +0.9

Or see this region's nucleotide sequence