Strain Fitness in Xanthobacter sp. DMC5 around GFF1590

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1589 and GFF1590 are separated by 6 nucleotidesGFF1590 and GFF1591 are separated by 42 nucleotidesGFF1591 and GFF1592 are separated by 33 nucleotides GFF1589 - Putative acyl-CoA dehydrogenase FadE17, at 235,856 to 237,034 GFF1589 GFF1590 - Caffeyl-CoA reductase-Etf complex subunit CarC, at 237,041 to 238,105 GFF1590 GFF1591 - Crotonyl-CoA hydratase, at 238,148 to 238,954 GFF1591 GFF1592 - HTH-type transcriptional repressor NanR, at 238,988 to 240,529 GFF1592 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1at 236.045 kb on + strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.138 kb on + strand, within GFF1589at 236.138 kb on + strand, within GFF1589at 236.139 kb on - strand, within GFF1589at 236.160 kb on - strand, within GFF1589at 236.160 kb on - strand, within GFF1589at 236.192 kb on + strand, within GFF1589at 236.193 kb on - strand, within GFF1589at 236.193 kb on - strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.309 kb on - strand, within GFF1589at 236.309 kb on - strand, within GFF1589at 236.310 kb on - strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.358 kb on - strand, within GFF1589at 236.686 kb on - strand, within GFF1589at 236.864 kb on + strand, within GFF1589at 236.866 kb on - strand, within GFF1589at 236.975 kb on + strandat 236.975 kb on + strandat 236.975 kb on + strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.392 kb on + strand, within GFF1590at 237.392 kb on + strand, within GFF1590at 237.393 kb on - strand, within GFF1590at 237.578 kb on - strand, within GFF1590at 237.758 kb on + strand, within GFF1590at 237.759 kb on - strand, within GFF1590at 237.759 kb on - strand, within GFF1590at 237.935 kb on + strand, within GFF1590at 237.935 kb on + strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 238.010 kb on + strandat 238.028 kb on + strandat 238.028 kb on + strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.289 kb on + strand, within GFF1591at 238.289 kb on + strand, within GFF1591at 238.635 kb on - strand, within GFF1591at 238.754 kb on + strand, within GFF1591at 238.754 kb on + strand, within GFF1591at 238.754 kb on + strand, within GFF1591at 238.754 kb on + strand, within GFF1591at 238.754 kb on + strand, within GFF1591at 238.755 kb on - strand, within GFF1591at 238.755 kb on - strand, within GFF1591at 238.755 kb on - strand, within GFF1591at 239.037 kb on + strandat 239.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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236,045 + GFF1589 0.16 -0.3
236,046 - GFF1589 0.16 -0.5
236,046 - GFF1589 0.16 -0.2
236,046 - GFF1589 0.16 +0.1
236,046 - GFF1589 0.16 +0.1
236,138 + GFF1589 0.24 +0.2
236,138 + GFF1589 0.24 -0.5
236,139 - GFF1589 0.24 +0.5
236,160 - GFF1589 0.26 +0.8
236,160 - GFF1589 0.26 -1.1
236,192 + GFF1589 0.28 +1.3
236,193 - GFF1589 0.29 +0.2
236,193 - GFF1589 0.29 +0.2
236,308 + GFF1589 0.38 -1.8
236,308 + GFF1589 0.38 -0.0
236,308 + GFF1589 0.38 -0.0
236,308 + GFF1589 0.38 +0.2
236,308 + GFF1589 0.38 -0.3
236,308 + GFF1589 0.38 -0.7
236,309 - GFF1589 0.38 +1.0
236,309 - GFF1589 0.38 -0.9
236,310 - GFF1589 0.39 +0.4
236,357 + GFF1589 0.42 +0.2
236,357 + GFF1589 0.42 -0.3
236,357 + GFF1589 0.42 -0.7
236,358 - GFF1589 0.43 +0.1
236,686 - GFF1589 0.70 -0.3
236,864 + GFF1589 0.85 -0.5
236,866 - GFF1589 0.86 +0.9
236,975 + -0.8
236,975 + -0.4
236,975 + -0.2
236,976 - -1.3
236,976 - -1.1
236,976 - -0.9
236,976 - -2.3
236,976 - -0.4
236,976 - -0.0
237,116 + -1.1
237,116 + -0.4
237,116 + +1.1
237,116 + -0.7
237,116 + +1.2
237,116 + -1.0
237,116 + -0.4
237,116 + -0.5
237,116 + -0.8
237,117 - -0.3
237,117 - +0.4
237,117 - -1.0
237,117 - -1.3
237,117 - +0.2
237,392 + GFF1590 0.33 -0.9
237,392 + GFF1590 0.33 +0.1
237,393 - GFF1590 0.33 -1.2
237,578 - GFF1590 0.50 -1.4
237,758 + GFF1590 0.67 -0.3
237,759 - GFF1590 0.67 -0.7
237,759 - GFF1590 0.67 +1.5
237,935 + GFF1590 0.84 +0.3
237,935 + GFF1590 0.84 -0.3
237,936 - GFF1590 0.84 -0.3
237,936 - GFF1590 0.84 +0.3
237,936 - GFF1590 0.84 -1.0
237,936 - GFF1590 0.84 -1.1
238,010 + -0.3
238,028 + -1.2
238,028 + +0.5
238,029 - -0.7
238,029 - +0.1
238,029 - +0.2
238,029 - +0.6
238,029 - -0.8
238,029 - +0.3
238,289 + GFF1591 0.17 +0.1
238,289 + GFF1591 0.17 -1.3
238,635 - GFF1591 0.60 -0.9
238,754 + GFF1591 0.75 -0.3
238,754 + GFF1591 0.75 +0.3
238,754 + GFF1591 0.75 +0.2
238,754 + GFF1591 0.75 +0.2
238,754 + GFF1591 0.75 +0.7
238,755 - GFF1591 0.75 -0.3
238,755 - GFF1591 0.75 +0.5
238,755 - GFF1591 0.75 -1.8
239,037 + -0.6
239,037 + +0.7

Or see this region's nucleotide sequence