Strain Fitness in Xanthobacter sp. DMC5 around GFF1583

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1582 and GFF1583 overlap by 4 nucleotidesGFF1583 and GFF1584 are separated by 85 nucleotides GFF1582 - hypothetical protein, at 228,286 to 229,332 GFF1582 GFF1583 - High-affinity branched-chain amino acid transport system permease protein LivH, at 229,329 to 230,213 GFF1583 GFF1584 - hypothetical protein, at 230,299 to 231,597 GFF1584 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2at 228.370 kb on - strandat 228.428 kb on + strand, within GFF1582at 228.428 kb on + strand, within GFF1582at 228.429 kb on - strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.587 kb on + strand, within GFF1582at 228.587 kb on + strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.644 kb on + strand, within GFF1582at 228.660 kb on + strand, within GFF1582at 228.711 kb on - strand, within GFF1582at 228.711 kb on - strand, within GFF1582at 228.779 kb on + strand, within GFF1582at 228.780 kb on - strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.786 kb on - strand, within GFF1582at 228.865 kb on + strand, within GFF1582at 228.866 kb on - strand, within GFF1582at 228.891 kb on + strand, within GFF1582at 228.947 kb on + strand, within GFF1582at 228.975 kb on - strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.073 kb on + strand, within GFF1582at 229.073 kb on + strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.124 kb on + strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.158 kb on - strand, within GFF1582at 229.625 kb on - strand, within GFF1583at 229.625 kb on - strand, within GFF1583at 229.625 kb on - strand, within GFF1583at 229.813 kb on + strand, within GFF1583at 229.813 kb on + strand, within GFF1583at 229.813 kb on + strand, within GFF1583at 229.813 kb on + strand, within GFF1583at 229.816 kb on + strand, within GFF1583at 229.978 kb on + strand, within GFF1583at 230.065 kb on + strand, within GFF1583at 230.065 kb on + strand, within GFF1583at 230.066 kb on - strand, within GFF1583at 230.066 kb on - strand, within GFF1583at 230.156 kb on - strandat 230.156 kb on - strandat 230.156 kb on - strandat 230.156 kb on - strandat 230.156 kb on - strandat 230.156 kb on - strandat 230.156 kb on - strandat 230.239 kb on + strandat 230.339 kb on - strandat 230.449 kb on + strand, within GFF1584at 230.465 kb on + strand, within GFF1584at 230.466 kb on - strand, within GFF1584at 230.466 kb on - strand, within GFF1584at 230.573 kb on + strand, within GFF1584at 230.573 kb on + strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.574 kb on - strand, within GFF1584at 230.601 kb on - strand, within GFF1584at 230.601 kb on - strand, within GFF1584at 230.711 kb on + strand, within GFF1584at 230.711 kb on + strand, within GFF1584at 230.712 kb on - strand, within GFF1584at 230.712 kb on - strand, within GFF1584at 230.714 kb on + strand, within GFF1584at 230.744 kb on + strand, within GFF1584at 230.744 kb on + strand, within GFF1584at 230.745 kb on - strand, within GFF1584at 230.745 kb on - strand, within GFF1584at 230.849 kb on + strand, within GFF1584at 230.849 kb on + strand, within GFF1584at 230.850 kb on - strand, within GFF1584at 230.850 kb on - strand, within GFF1584at 230.954 kb on + strand, within GFF1584at 231.020 kb on + strand, within GFF1584at 231.020 kb on + strand, within GFF1584at 231.020 kb on + strand, within GFF1584at 231.020 kb on + strand, within GFF1584at 231.021 kb on - strand, within GFF1584at 231.021 kb on - strand, within GFF1584at 231.021 kb on - strand, within GFF1584at 231.021 kb on - strand, within GFF1584at 231.131 kb on + strand, within GFF1584at 231.132 kb on - strand, within GFF1584at 231.150 kb on - strand, within GFF1584at 231.194 kb on + strand, within GFF1584at 231.194 kb on + strand, within GFF1584at 231.194 kb on + strand, within GFF1584at 231.195 kb on - strand, within GFF1584

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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228,370 - -0.2
228,428 + GFF1582 0.14 -0.3
228,428 + GFF1582 0.14 -1.0
228,429 - GFF1582 0.14 -0.1
228,569 + GFF1582 0.27 -0.3
228,569 + GFF1582 0.27 +0.4
228,569 + GFF1582 0.27 -0.0
228,587 + GFF1582 0.29 +0.5
228,587 + GFF1582 0.29 +1.6
228,588 - GFF1582 0.29 +0.5
228,588 - GFF1582 0.29 +1.3
228,588 - GFF1582 0.29 -0.8
228,644 + GFF1582 0.34 +0.7
228,660 + GFF1582 0.36 -1.1
228,711 - GFF1582 0.41 +1.8
228,711 - GFF1582 0.41 +0.7
228,779 + GFF1582 0.47 +0.0
228,780 - GFF1582 0.47 -0.9
228,782 + GFF1582 0.47 +0.8
228,782 + GFF1582 0.47 -0.3
228,782 + GFF1582 0.47 +0.5
228,786 - GFF1582 0.48 +1.5
228,865 + GFF1582 0.55 +0.1
228,866 - GFF1582 0.55 -0.8
228,891 + GFF1582 0.58 -0.9
228,947 + GFF1582 0.63 +0.1
228,975 - GFF1582 0.66 +1.0
229,046 + GFF1582 0.73 -0.6
229,046 + GFF1582 0.73 -0.5
229,046 + GFF1582 0.73 -0.4
229,047 - GFF1582 0.73 -0.5
229,047 - GFF1582 0.73 -0.6
229,047 - GFF1582 0.73 +0.8
229,047 - GFF1582 0.73 -0.9
229,073 + GFF1582 0.75 -0.4
229,073 + GFF1582 0.75 -0.0
229,074 - GFF1582 0.75 +0.3
229,074 - GFF1582 0.75 -0.0
229,074 - GFF1582 0.75 -1.4
229,124 + GFF1582 0.80 -0.7
229,125 - GFF1582 0.80 +0.4
229,125 - GFF1582 0.80 +0.6
229,125 - GFF1582 0.80 -0.2
229,158 - GFF1582 0.83 +0.4
229,625 - GFF1583 0.33 -0.0
229,625 - GFF1583 0.33 +1.0
229,625 - GFF1583 0.33 +0.7
229,813 + GFF1583 0.55 +0.1
229,813 + GFF1583 0.55 -0.3
229,813 + GFF1583 0.55 +0.7
229,813 + GFF1583 0.55 -0.0
229,816 + GFF1583 0.55 +1.6
229,978 + GFF1583 0.73 -1.1
230,065 + GFF1583 0.83 -0.0
230,065 + GFF1583 0.83 -1.0
230,066 - GFF1583 0.83 +0.5
230,066 - GFF1583 0.83 +0.8
230,156 - +0.1
230,156 - -0.8
230,156 - +0.9
230,156 - -1.5
230,156 - +0.3
230,156 - -0.1
230,156 - +0.1
230,239 + -0.3
230,339 - +0.5
230,449 + GFF1584 0.12 +0.5
230,465 + GFF1584 0.13 -1.5
230,466 - GFF1584 0.13 +0.5
230,466 - GFF1584 0.13 -0.6
230,573 + GFF1584 0.21 -0.5
230,573 + GFF1584 0.21 +0.5
230,574 - GFF1584 0.21 +0.3
230,574 - GFF1584 0.21 +1.0
230,574 - GFF1584 0.21 -0.8
230,574 - GFF1584 0.21 +0.5
230,574 - GFF1584 0.21 +0.6
230,574 - GFF1584 0.21 -1.2
230,574 - GFF1584 0.21 -1.5
230,574 - GFF1584 0.21 -0.2
230,574 - GFF1584 0.21 -0.8
230,574 - GFF1584 0.21 +0.3
230,601 - GFF1584 0.23 -1.6
230,601 - GFF1584 0.23 -1.1
230,711 + GFF1584 0.32 -0.9
230,711 + GFF1584 0.32 -0.3
230,712 - GFF1584 0.32 -0.6
230,712 - GFF1584 0.32 +0.4
230,714 + GFF1584 0.32 -0.2
230,744 + GFF1584 0.34 -0.7
230,744 + GFF1584 0.34 +0.0
230,745 - GFF1584 0.34 -0.0
230,745 - GFF1584 0.34 +0.3
230,849 + GFF1584 0.42 -0.6
230,849 + GFF1584 0.42 -1.1
230,850 - GFF1584 0.42 +1.3
230,850 - GFF1584 0.42 -1.6
230,954 + GFF1584 0.50 -0.9
231,020 + GFF1584 0.56 +0.3
231,020 + GFF1584 0.56 -2.7
231,020 + GFF1584 0.56 +0.7
231,020 + GFF1584 0.56 -0.1
231,021 - GFF1584 0.56 +0.7
231,021 - GFF1584 0.56 -0.9
231,021 - GFF1584 0.56 -1.5
231,021 - GFF1584 0.56 -0.8
231,131 + GFF1584 0.64 +1.0
231,132 - GFF1584 0.64 -0.1
231,150 - GFF1584 0.66 +0.2
231,194 + GFF1584 0.69 +0.1
231,194 + GFF1584 0.69 -0.2
231,194 + GFF1584 0.69 -0.3
231,195 - GFF1584 0.69 -0.4

Or see this region's nucleotide sequence