Strain Fitness in Xanthobacter sp. DMC5 around GFF1581

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1579 and GFF1580 are separated by 13 nucleotidesGFF1580 and GFF1581 overlap by 20 nucleotidesGFF1581 and GFF1582 overlap by 4 nucleotides GFF1579 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 226,098 to 226,841 GFF1579 GFF1580 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 226,855 to 227,571 GFF1580 GFF1581 - Lipopolysaccharide export system ATP-binding protein LptB, at 227,552 to 228,289 GFF1581 GFF1582 - hypothetical protein, at 228,286 to 229,332 GFF1582 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 226.832 kb on + strandat 226.832 kb on + strandat 226.832 kb on + strandat 226.833 kb on - strandat 226.833 kb on - strandat 226.833 kb on - strandat 226.835 kb on + strandat 226.835 kb on + strandat 226.835 kb on + strandat 226.836 kb on - strandat 226.868 kb on + strandat 226.868 kb on + strandat 226.868 kb on + strandat 226.868 kb on + strandat 226.868 kb on + strandat 226.868 kb on + strandat 226.869 kb on - strandat 226.869 kb on - strandat 226.869 kb on - strandat 226.947 kb on - strand, within GFF1580at 227.095 kb on + strand, within GFF1580at 227.095 kb on + strand, within GFF1580at 227.241 kb on - strand, within GFF1580at 227.241 kb on - strand, within GFF1580at 227.528 kb on + strandat 227.529 kb on - strandat 227.529 kb on - strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.571 kb on + strandat 227.572 kb on - strandat 227.572 kb on - strandat 227.586 kb on + strandat 228.370 kb on - strandat 228.428 kb on + strand, within GFF1582at 228.428 kb on + strand, within GFF1582at 228.429 kb on - strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.569 kb on + strand, within GFF1582at 228.587 kb on + strand, within GFF1582at 228.587 kb on + strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.588 kb on - strand, within GFF1582at 228.644 kb on + strand, within GFF1582at 228.660 kb on + strand, within GFF1582at 228.711 kb on - strand, within GFF1582at 228.711 kb on - strand, within GFF1582at 228.779 kb on + strand, within GFF1582at 228.780 kb on - strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.782 kb on + strand, within GFF1582at 228.786 kb on - strand, within GFF1582at 228.865 kb on + strand, within GFF1582at 228.866 kb on - strand, within GFF1582at 228.891 kb on + strand, within GFF1582at 228.947 kb on + strand, within GFF1582at 228.975 kb on - strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.046 kb on + strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.047 kb on - strand, within GFF1582at 229.073 kb on + strand, within GFF1582at 229.073 kb on + strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.074 kb on - strand, within GFF1582at 229.124 kb on + strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.125 kb on - strand, within GFF1582at 229.158 kb on - strand, within GFF1582

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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226,832 + -0.5
226,832 + -1.0
226,832 + +1.0
226,833 - -0.7
226,833 - -0.5
226,833 - -1.0
226,835 + +0.2
226,835 + -0.3
226,835 + +0.9
226,836 - -0.1
226,868 + -0.3
226,868 + -0.9
226,868 + -0.5
226,868 + +0.1
226,868 + +0.4
226,868 + +1.1
226,869 - +0.9
226,869 - -1.9
226,869 - -0.1
226,947 - GFF1580 0.13 +0.3
227,095 + GFF1580 0.33 -0.0
227,095 + GFF1580 0.33 +0.4
227,241 - GFF1580 0.54 -0.3
227,241 - GFF1580 0.54 -1.4
227,528 + +0.5
227,529 - +1.7
227,529 - -0.4
227,571 + +0.0
227,571 + -0.2
227,571 + -0.5
227,571 + -0.8
227,571 + -0.2
227,571 + +0.6
227,571 + +1.9
227,571 + +0.5
227,571 + +0.6
227,572 - +0.1
227,572 - +0.1
227,586 + -0.2
228,370 - -0.2
228,428 + GFF1582 0.14 -0.3
228,428 + GFF1582 0.14 -1.0
228,429 - GFF1582 0.14 -0.1
228,569 + GFF1582 0.27 -0.3
228,569 + GFF1582 0.27 +0.4
228,569 + GFF1582 0.27 -0.0
228,587 + GFF1582 0.29 +0.5
228,587 + GFF1582 0.29 +1.6
228,588 - GFF1582 0.29 +0.5
228,588 - GFF1582 0.29 +1.3
228,588 - GFF1582 0.29 -0.8
228,644 + GFF1582 0.34 +0.7
228,660 + GFF1582 0.36 -1.1
228,711 - GFF1582 0.41 +1.8
228,711 - GFF1582 0.41 +0.7
228,779 + GFF1582 0.47 +0.0
228,780 - GFF1582 0.47 -0.9
228,782 + GFF1582 0.47 +0.8
228,782 + GFF1582 0.47 -0.3
228,782 + GFF1582 0.47 +0.5
228,786 - GFF1582 0.48 +1.5
228,865 + GFF1582 0.55 +0.1
228,866 - GFF1582 0.55 -0.8
228,891 + GFF1582 0.58 -0.9
228,947 + GFF1582 0.63 +0.1
228,975 - GFF1582 0.66 +1.0
229,046 + GFF1582 0.73 -0.6
229,046 + GFF1582 0.73 -0.5
229,046 + GFF1582 0.73 -0.4
229,047 - GFF1582 0.73 -0.5
229,047 - GFF1582 0.73 -0.6
229,047 - GFF1582 0.73 +0.8
229,047 - GFF1582 0.73 -0.9
229,073 + GFF1582 0.75 -0.4
229,073 + GFF1582 0.75 -0.0
229,074 - GFF1582 0.75 +0.3
229,074 - GFF1582 0.75 -0.0
229,074 - GFF1582 0.75 -1.4
229,124 + GFF1582 0.80 -0.7
229,125 - GFF1582 0.80 +0.4
229,125 - GFF1582 0.80 +0.6
229,125 - GFF1582 0.80 -0.2
229,158 - GFF1582 0.83 +0.4

Or see this region's nucleotide sequence