Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1575 and GFF1576 are separated by 29 nucleotides GFF1576 and GFF1577 are separated by 19 nucleotides GFF1577 and GFF1578 are separated by 995 nucleotides
GFF1575 - hypothetical protein, at 220,853 to 222,433
GFF1575
GFF1576 - hypothetical protein, at 222,463 to 223,137
GFF1576
GFF1577 - Glycerol dehydrogenase, at 223,157 to 224,245
GFF1577
GFF1578 - Apulose-4-phosphate transketolase subunit A, at 225,241 to 226,077
GFF1578
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.195 kb on - strand, within GFF1575 at 222.432 kb on - strand at 222.820 kb on + strand, within GFF1576 at 222.820 kb on + strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.949 kb on + strand, within GFF1576 at 222.950 kb on - strand, within GFF1576 at 223.087 kb on + strand at 223.214 kb on - strand at 223.214 kb on - strand at 223.341 kb on + strand, within GFF1577 at 223.341 kb on + strand, within GFF1577 at 223.342 kb on - strand, within GFF1577 at 223.342 kb on - strand, within GFF1577 at 223.410 kb on + strand, within GFF1577 at 223.410 kb on + strand, within GFF1577 at 223.538 kb on + strand, within GFF1577 at 223.539 kb on - strand, within GFF1577 at 223.539 kb on - strand, within GFF1577 at 223.539 kb on - strand, within GFF1577 at 223.539 kb on - strand, within GFF1577 at 223.780 kb on + strand, within GFF1577 at 223.829 kb on + strand, within GFF1577 at 223.829 kb on + strand, within GFF1577 at 223.829 kb on + strand, within GFF1577 at 223.830 kb on - strand, within GFF1577 at 223.830 kb on - strand, within GFF1577 at 223.830 kb on - strand, within GFF1577 at 223.830 kb on - strand, within GFF1577 at 223.848 kb on + strand, within GFF1577 at 223.894 kb on + strand, within GFF1577 at 223.895 kb on - strand, within GFF1577 at 224.208 kb on + strand at 224.209 kb on - strand at 224.209 kb on - strand at 224.251 kb on + strand at 224.251 kb on + strand at 224.252 kb on - strand at 224.252 kb on - strand at 224.252 kb on - strand at 224.338 kb on + strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.413 kb on + strand at 224.413 kb on + strand at 224.731 kb on + strand at 224.731 kb on + strand at 224.732 kb on - strand at 224.867 kb on - strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.986 kb on + strand at 224.987 kb on - strand at 225.058 kb on + strand at 225.058 kb on + strand at 225.059 kb on - strand at 225.059 kb on - strand at 225.091 kb on + strand at 225.103 kb on + strand at 225.104 kb on - strand at 225.104 kb on - strand at 225.242 kb on + strand at 225.242 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 222,195 - GFF1575 0.85 -0.3 222,432 - +1.1 222,820 + GFF1576 0.53 +0.8 222,820 + GFF1576 0.53 +0.3 222,821 - GFF1576 0.53 +0.4 222,821 - GFF1576 0.53 +0.7 222,821 - GFF1576 0.53 -1.4 222,949 + GFF1576 0.72 -0.9 222,950 - GFF1576 0.72 -0.6 223,087 + +0.2 223,214 - -1.0 223,214 - +0.1 223,341 + GFF1577 0.17 +0.6 223,341 + GFF1577 0.17 -1.1 223,342 - GFF1577 0.17 +0.3 223,342 - GFF1577 0.17 +0.1 223,410 + GFF1577 0.23 -0.3 223,410 + GFF1577 0.23 +0.8 223,538 + GFF1577 0.35 +0.3 223,539 - GFF1577 0.35 -0.4 223,539 - GFF1577 0.35 -0.5 223,539 - GFF1577 0.35 -0.6 223,539 - GFF1577 0.35 -0.1 223,780 + GFF1577 0.57 -0.3 223,829 + GFF1577 0.62 -0.1 223,829 + GFF1577 0.62 +0.6 223,829 + GFF1577 0.62 +0.8 223,830 - GFF1577 0.62 +0.2 223,830 - GFF1577 0.62 +0.3 223,830 - GFF1577 0.62 +0.7 223,830 - GFF1577 0.62 +0.4 223,848 + GFF1577 0.63 +1.7 223,894 + GFF1577 0.68 -2.8 223,895 - GFF1577 0.68 -1.1 224,208 + -1.0 224,209 - +1.4 224,209 - -0.0 224,251 + -0.6 224,251 + +1.6 224,252 - +0.4 224,252 - -0.1 224,252 - +0.5 224,338 + -1.1 224,339 - -1.2 224,339 - -0.0 224,339 - -1.7 224,413 + -0.6 224,413 + -2.2 224,731 + -0.5 224,731 + +1.3 224,732 - +0.4 224,867 - -0.2 224,974 + -0.1 224,974 + -0.2 224,974 + +0.2 224,974 + +1.3 224,975 - +0.3 224,975 - +0.4 224,975 - -1.9 224,975 - +0.5 224,986 + +0.2 224,987 - -0.0 225,058 + -0.3 225,058 + +0.6 225,059 - +0.2 225,059 - -0.1 225,091 + -1.4 225,103 + +0.5 225,104 - +0.3 225,104 - -0.6 225,242 + +0.5 225,242 + +0.3
Or see this region's nucleotide sequence