Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF155 and GFF156 overlap by 4 nucleotides GFF156 and GFF157 are separated by 100 nucleotides GFF157 and GFF158 are separated by 68 nucleotides GFF158 and GFF159 are separated by 105 nucleotides
GFF155 - hypothetical protein, at 166,028 to 166,534
GFF155
GFF156 - hypothetical protein, at 166,531 to 167,190
GFF156
GFF157 - RNA pyrophosphohydrolase, at 167,291 to 167,755
GFF157
GFF158 - hypothetical protein, at 167,824 to 168,231
GFF158
GFF159 - hypothetical protein, at 168,337 to 168,609
GFF159
Position (kb) 167
168 Strain fitness (log2 ratio) -1
0
1
2 at 166.602 kb on - strand, within GFF156 at 166.602 kb on - strand, within GFF156 at 166.697 kb on + strand, within GFF156 at 166.811 kb on + strand, within GFF156 at 166.862 kb on + strand, within GFF156 at 166.862 kb on + strand, within GFF156 at 167.221 kb on + strand at 167.222 kb on - strand at 167.933 kb on - strand, within GFF158 at 168.087 kb on + strand, within GFF158 at 168.119 kb on - strand, within GFF158 at 168.293 kb on + strand at 168.419 kb on - strand, within GFF159 at 168.544 kb on + strand, within GFF159 at 168.544 kb on + strand, within GFF159 at 168.545 kb on - strand, within GFF159
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 166,602 - GFF156 0.11 +1.6 166,602 - GFF156 0.11 -0.5 166,697 + GFF156 0.25 -0.1 166,811 + GFF156 0.42 +0.7 166,862 + GFF156 0.50 -0.7 166,862 + GFF156 0.50 +0.4 167,221 + -0.1 167,222 - -0.8 167,933 - GFF158 0.27 +0.2 168,087 + GFF158 0.64 +2.5 168,119 - GFF158 0.72 +0.6 168,293 + +0.5 168,419 - GFF159 0.30 +0.3 168,544 + GFF159 0.76 -1.4 168,544 + GFF159 0.76 -0.4 168,545 - GFF159 0.76 +0.9
Or see this region's nucleotide sequence