Strain Fitness in Xanthobacter sp. DMC5 around GFF1567

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1566 and GFF1567 are separated by 188 nucleotidesGFF1567 and GFF1568 are separated by 61 nucleotides GFF1566 - Beta-barrel assembly-enhancing protease, at 207,700 to 210,045 GFF1566 GFF1567 - Putative multidrug resistance protein MdtD, at 210,234 to 211,889 GFF1567 GFF1568 - Glutaminase 1, at 211,951 to 212,946 GFF1568 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 209.319 kb on + strand, within GFF1566at 209.319 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.418 kb on - strand, within GFF1566at 209.525 kb on + strand, within GFF1566at 209.528 kb on - strand, within GFF1566at 209.573 kb on + strand, within GFF1566at 209.573 kb on + strand, within GFF1566at 209.574 kb on - strand, within GFF1566at 209.621 kb on + strand, within GFF1566at 209.621 kb on + strand, within GFF1566at 209.726 kb on + strand, within GFF1566at 210.082 kb on + strandat 210.082 kb on + strandat 210.082 kb on + strandat 210.083 kb on - strandat 210.083 kb on - strandat 210.083 kb on - strandat 210.283 kb on + strandat 210.284 kb on - strandat 210.666 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 211.469 kb on - strand, within GFF1567at 211.617 kb on + strand, within GFF1567at 211.618 kb on - strand, within GFF1567at 211.687 kb on + strand, within GFF1567at 211.687 kb on + strand, within GFF1567at 211.687 kb on + strand, within GFF1567at 211.687 kb on + strand, within GFF1567at 211.687 kb on + strand, within GFF1567at 211.688 kb on - strand, within GFF1567at 211.688 kb on - strand, within GFF1567at 211.688 kb on - strand, within GFF1567at 211.688 kb on - strand, within GFF1567at 212.003 kb on + strandat 212.003 kb on + strandat 212.004 kb on - strandat 212.004 kb on - strandat 212.141 kb on + strand, within GFF1568at 212.141 kb on + strand, within GFF1568at 212.165 kb on + strand, within GFF1568at 212.198 kb on + strand, within GFF1568at 212.199 kb on - strand, within GFF1568at 212.199 kb on - strand, within GFF1568at 212.199 kb on - strand, within GFF1568at 212.245 kb on + strand, within GFF1568at 212.321 kb on + strand, within GFF1568at 212.321 kb on + strand, within GFF1568at 212.321 kb on + strand, within GFF1568at 212.322 kb on - strand, within GFF1568at 212.322 kb on - strand, within GFF1568at 212.322 kb on - strand, within GFF1568at 212.351 kb on + strand, within GFF1568at 212.351 kb on + strand, within GFF1568at 212.352 kb on - strand, within GFF1568at 212.352 kb on - strand, within GFF1568at 212.423 kb on + strand, within GFF1568at 212.423 kb on + strand, within GFF1568at 212.423 kb on + strand, within GFF1568at 212.423 kb on + strand, within GFF1568at 212.423 kb on + strand, within GFF1568at 212.424 kb on - strand, within GFF1568at 212.424 kb on - strand, within GFF1568at 212.598 kb on - strand, within GFF1568at 212.738 kb on + strand, within GFF1568at 212.738 kb on + strand, within GFF1568at 212.738 kb on + strand, within GFF1568at 212.739 kb on - strand, within GFF1568at 212.739 kb on - strand, within GFF1568

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
209,319 + GFF1566 0.69 +0.4
209,319 + GFF1566 0.69 +2.1
209,417 + GFF1566 0.73 -0.1
209,417 + GFF1566 0.73 -0.7
209,417 + GFF1566 0.73 +1.3
209,418 - GFF1566 0.73 -1.1
209,525 + GFF1566 0.78 +0.1
209,528 - GFF1566 0.78 -0.1
209,573 + GFF1566 0.80 +0.2
209,573 + GFF1566 0.80 -0.6
209,574 - GFF1566 0.80 +0.7
209,621 + GFF1566 0.82 -1.1
209,621 + GFF1566 0.82 +2.3
209,726 + GFF1566 0.86 -0.1
210,082 + -1.1
210,082 + -2.6
210,082 + -0.6
210,083 - -0.6
210,083 - -0.4
210,083 - -1.5
210,283 + -0.4
210,284 - +0.5
210,666 + GFF1567 0.26 -0.0
210,838 + GFF1567 0.36 -0.2
210,838 + GFF1567 0.36 -0.3
210,838 + GFF1567 0.36 +0.7
210,838 + GFF1567 0.36 +0.2
210,839 - GFF1567 0.37 -1.6
210,839 - GFF1567 0.37 +0.6
210,839 - GFF1567 0.37 +0.1
210,941 - GFF1567 0.43 -0.4
210,941 - GFF1567 0.43 +0.6
210,941 - GFF1567 0.43 +0.9
210,941 - GFF1567 0.43 +0.3
211,469 - GFF1567 0.75 -0.1
211,617 + GFF1567 0.84 +0.9
211,618 - GFF1567 0.84 +0.2
211,687 + GFF1567 0.88 +0.2
211,687 + GFF1567 0.88 -0.4
211,687 + GFF1567 0.88 -0.9
211,687 + GFF1567 0.88 -0.1
211,687 + GFF1567 0.88 -1.4
211,688 - GFF1567 0.88 +0.4
211,688 - GFF1567 0.88 +0.2
211,688 - GFF1567 0.88 -0.2
211,688 - GFF1567 0.88 +0.1
212,003 + -1.3
212,003 + +0.6
212,004 - +0.4
212,004 - +0.3
212,141 + GFF1568 0.19 -0.6
212,141 + GFF1568 0.19 +0.2
212,165 + GFF1568 0.21 -0.4
212,198 + GFF1568 0.25 -0.9
212,199 - GFF1568 0.25 -2.7
212,199 - GFF1568 0.25 +0.6
212,199 - GFF1568 0.25 +0.8
212,245 + GFF1568 0.30 -1.4
212,321 + GFF1568 0.37 -0.4
212,321 + GFF1568 0.37 -0.3
212,321 + GFF1568 0.37 -0.3
212,322 - GFF1568 0.37 -1.8
212,322 - GFF1568 0.37 -0.6
212,322 - GFF1568 0.37 -0.6
212,351 + GFF1568 0.40 +0.3
212,351 + GFF1568 0.40 -2.3
212,352 - GFF1568 0.40 +1.5
212,352 - GFF1568 0.40 -1.1
212,423 + GFF1568 0.47 -2.0
212,423 + GFF1568 0.47 -1.0
212,423 + GFF1568 0.47 -0.7
212,423 + GFF1568 0.47 +0.4
212,423 + GFF1568 0.47 +0.2
212,424 - GFF1568 0.47 +0.2
212,424 - GFF1568 0.47 -2.8
212,598 - GFF1568 0.65 +0.4
212,738 + GFF1568 0.79 +1.2
212,738 + GFF1568 0.79 -0.5
212,738 + GFF1568 0.79 +0.2
212,739 - GFF1568 0.79 -0.0
212,739 - GFF1568 0.79 +1.3

Or see this region's nucleotide sequence