Strain Fitness in Xanthobacter sp. DMC5 around GFF1566

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1565 and GFF1566 are separated by 154 nucleotidesGFF1566 and GFF1567 are separated by 188 nucleotides GFF1565 - Adaptive-response sensory-kinase SasA, at 204,891 to 207,545 GFF1565 GFF1566 - Beta-barrel assembly-enhancing protease, at 207,700 to 210,045 GFF1566 GFF1567 - Putative multidrug resistance protein MdtD, at 210,234 to 211,889 GFF1567 Position (kb) 207 208 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2at 206.827 kb on + strand, within GFF1565at 206.827 kb on + strand, within GFF1565at 206.828 kb on - strand, within GFF1565at 206.828 kb on - strand, within GFF1565at 207.094 kb on + strand, within GFF1565at 207.122 kb on - strand, within GFF1565at 207.187 kb on + strand, within GFF1565at 207.188 kb on - strand, within GFF1565at 207.188 kb on - strand, within GFF1565at 207.218 kb on - strand, within GFF1565at 207.263 kb on - strand, within GFF1565at 207.274 kb on + strand, within GFF1565at 207.274 kb on + strand, within GFF1565at 207.275 kb on - strand, within GFF1565at 207.278 kb on - strand, within GFF1565at 207.352 kb on + strandat 207.352 kb on + strandat 207.353 kb on - strandat 207.353 kb on - strandat 207.463 kb on + strandat 207.464 kb on - strandat 207.464 kb on - strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.475 kb on + strandat 207.476 kb on - strandat 207.511 kb on + strandat 207.511 kb on + strandat 207.562 kb on + strandat 207.562 kb on + strandat 207.562 kb on + strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.563 kb on - strandat 207.921 kb on - strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.932 kb on + strandat 207.993 kb on - strand, within GFF1566at 207.993 kb on - strand, within GFF1566at 208.112 kb on + strand, within GFF1566at 208.277 kb on + strand, within GFF1566at 208.823 kb on + strand, within GFF1566at 208.823 kb on + strand, within GFF1566at 208.823 kb on + strand, within GFF1566at 208.824 kb on - strand, within GFF1566at 208.824 kb on - strand, within GFF1566at 208.824 kb on - strand, within GFF1566at 209.006 kb on + strand, within GFF1566at 209.006 kb on + strand, within GFF1566at 209.006 kb on + strand, within GFF1566at 209.006 kb on + strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.007 kb on - strand, within GFF1566at 209.319 kb on + strand, within GFF1566at 209.319 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.417 kb on + strand, within GFF1566at 209.418 kb on - strand, within GFF1566at 209.525 kb on + strand, within GFF1566at 209.528 kb on - strand, within GFF1566at 209.573 kb on + strand, within GFF1566at 209.573 kb on + strand, within GFF1566at 209.574 kb on - strand, within GFF1566at 209.621 kb on + strand, within GFF1566at 209.621 kb on + strand, within GFF1566at 209.726 kb on + strand, within GFF1566at 210.082 kb on + strandat 210.082 kb on + strandat 210.082 kb on + strandat 210.083 kb on - strandat 210.083 kb on - strandat 210.083 kb on - strandat 210.283 kb on + strandat 210.284 kb on - strandat 210.666 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.838 kb on + strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.839 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567at 210.941 kb on - strand, within GFF1567

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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206,827 + GFF1565 0.73 -0.6
206,827 + GFF1565 0.73 -0.9
206,828 - GFF1565 0.73 -1.8
206,828 - GFF1565 0.73 -1.1
207,094 + GFF1565 0.83 +0.1
207,122 - GFF1565 0.84 -0.5
207,187 + GFF1565 0.86 +0.2
207,188 - GFF1565 0.87 -0.5
207,188 - GFF1565 0.87 +1.0
207,218 - GFF1565 0.88 +0.4
207,263 - GFF1565 0.89 -0.4
207,274 + GFF1565 0.90 +1.4
207,274 + GFF1565 0.90 +0.7
207,275 - GFF1565 0.90 +0.2
207,278 - GFF1565 0.90 -0.3
207,352 + +1.7
207,352 + +0.0
207,353 - +0.7
207,353 - +0.4
207,463 + +0.6
207,464 - -0.2
207,464 - +0.9
207,475 + -0.2
207,475 + +0.3
207,475 + +0.4
207,475 + +0.3
207,476 - +0.2
207,511 + -0.0
207,511 + -1.0
207,562 + -1.0
207,562 + -0.4
207,562 + +0.4
207,563 - +1.4
207,563 - -1.1
207,563 - +0.6
207,563 - -0.4
207,921 - -0.9
207,926 + +0.6
207,926 + +0.9
207,926 + +1.0
207,927 - +0.4
207,927 - -0.3
207,927 - -0.7
207,927 - -0.1
207,932 + -1.5
207,993 - GFF1566 0.12 -1.3
207,993 - GFF1566 0.12 -0.0
208,112 + GFF1566 0.18 -0.5
208,277 + GFF1566 0.25 -0.3
208,823 + GFF1566 0.48 +0.2
208,823 + GFF1566 0.48 +0.7
208,823 + GFF1566 0.48 -1.1
208,824 - GFF1566 0.48 +0.7
208,824 - GFF1566 0.48 -0.1
208,824 - GFF1566 0.48 +0.2
209,006 + GFF1566 0.56 +0.2
209,006 + GFF1566 0.56 -0.3
209,006 + GFF1566 0.56 +0.7
209,006 + GFF1566 0.56 +0.6
209,007 - GFF1566 0.56 -0.6
209,007 - GFF1566 0.56 -0.2
209,007 - GFF1566 0.56 +1.4
209,007 - GFF1566 0.56 -2.3
209,007 - GFF1566 0.56 +0.3
209,007 - GFF1566 0.56 -1.9
209,319 + GFF1566 0.69 +0.4
209,319 + GFF1566 0.69 +2.1
209,417 + GFF1566 0.73 -0.1
209,417 + GFF1566 0.73 -0.7
209,417 + GFF1566 0.73 +1.3
209,418 - GFF1566 0.73 -1.1
209,525 + GFF1566 0.78 +0.1
209,528 - GFF1566 0.78 -0.1
209,573 + GFF1566 0.80 +0.2
209,573 + GFF1566 0.80 -0.6
209,574 - GFF1566 0.80 +0.7
209,621 + GFF1566 0.82 -1.1
209,621 + GFF1566 0.82 +2.3
209,726 + GFF1566 0.86 -0.1
210,082 + -1.1
210,082 + -2.6
210,082 + -0.6
210,083 - -0.6
210,083 - -0.4
210,083 - -1.5
210,283 + -0.4
210,284 - +0.5
210,666 + GFF1567 0.26 -0.0
210,838 + GFF1567 0.36 -0.2
210,838 + GFF1567 0.36 -0.3
210,838 + GFF1567 0.36 +0.7
210,838 + GFF1567 0.36 +0.2
210,839 - GFF1567 0.37 -1.6
210,839 - GFF1567 0.37 +0.6
210,839 - GFF1567 0.37 +0.1
210,941 - GFF1567 0.43 -0.4
210,941 - GFF1567 0.43 +0.6
210,941 - GFF1567 0.43 +0.9
210,941 - GFF1567 0.43 +0.3

Or see this region's nucleotide sequence