Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1557 and GFF1558 overlap by 11 nucleotides GFF1558 and GFF1559 are separated by 140 nucleotides
GFF1557 - Xylulose kinase, at 196,283 to 197,839
GFF1557
GFF1558 - putative FAD-linked oxidoreductase, at 197,829 to 199,334
GFF1558
GFF1559 - HTH-type transcriptional repressor CytR, at 199,475 to 200,518
GFF1559
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 196.965 kb on + strand, within GFF1557 at 196.965 kb on + strand, within GFF1557 at 196.966 kb on - strand, within GFF1557 at 196.992 kb on + strand, within GFF1557 at 196.992 kb on + strand, within GFF1557 at 197.064 kb on - strand, within GFF1557 at 197.064 kb on - strand, within GFF1557 at 197.100 kb on + strand, within GFF1557 at 197.192 kb on + strand, within GFF1557 at 197.338 kb on + strand, within GFF1557 at 197.339 kb on - strand, within GFF1557 at 197.370 kb on + strand, within GFF1557 at 197.370 kb on + strand, within GFF1557 at 197.474 kb on + strand, within GFF1557 at 197.474 kb on + strand, within GFF1557 at 197.475 kb on - strand, within GFF1557 at 197.475 kb on - strand, within GFF1557 at 198.112 kb on + strand, within GFF1558 at 198.112 kb on + strand, within GFF1558 at 198.113 kb on - strand, within GFF1558 at 198.113 kb on - strand, within GFF1558 at 198.113 kb on - strand, within GFF1558 at 198.133 kb on + strand, within GFF1558 at 198.205 kb on + strand, within GFF1558 at 198.205 kb on + strand, within GFF1558 at 198.205 kb on + strand, within GFF1558 at 198.205 kb on + strand, within GFF1558 at 198.205 kb on + strand, within GFF1558 at 198.206 kb on - strand, within GFF1558 at 198.206 kb on - strand, within GFF1558 at 198.206 kb on - strand, within GFF1558 at 198.256 kb on + strand, within GFF1558 at 198.257 kb on - strand, within GFF1558 at 198.257 kb on - strand, within GFF1558 at 198.257 kb on - strand, within GFF1558 at 198.260 kb on - strand, within GFF1558 at 198.286 kb on + strand, within GFF1558 at 198.287 kb on - strand, within GFF1558 at 198.296 kb on - strand, within GFF1558 at 198.296 kb on - strand, within GFF1558 at 198.320 kb on - strand, within GFF1558 at 198.775 kb on + strand, within GFF1558 at 198.811 kb on - strand, within GFF1558 at 199.189 kb on + strand at 199.189 kb on + strand at 199.190 kb on - strand at 199.190 kb on - strand at 199.334 kb on + strand at 199.335 kb on - strand at 199.635 kb on + strand, within GFF1559 at 199.636 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.818 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 196,965 + GFF1557 0.44 +0.4 196,965 + GFF1557 0.44 -1.1 196,966 - GFF1557 0.44 +0.3 196,992 + GFF1557 0.46 -0.4 196,992 + GFF1557 0.46 +0.1 197,064 - GFF1557 0.50 -1.1 197,064 - GFF1557 0.50 +0.2 197,100 + GFF1557 0.52 -1.0 197,192 + GFF1557 0.58 -1.5 197,338 + GFF1557 0.68 -0.2 197,339 - GFF1557 0.68 -0.1 197,370 + GFF1557 0.70 +0.3 197,370 + GFF1557 0.70 +0.1 197,474 + GFF1557 0.76 +0.7 197,474 + GFF1557 0.76 -0.5 197,475 - GFF1557 0.77 +1.1 197,475 - GFF1557 0.77 +0.2 198,112 + GFF1558 0.19 -0.3 198,112 + GFF1558 0.19 -1.3 198,113 - GFF1558 0.19 -0.3 198,113 - GFF1558 0.19 +0.5 198,113 - GFF1558 0.19 +0.4 198,133 + GFF1558 0.20 -2.0 198,205 + GFF1558 0.25 +0.5 198,205 + GFF1558 0.25 +0.0 198,205 + GFF1558 0.25 -1.0 198,205 + GFF1558 0.25 +0.4 198,205 + GFF1558 0.25 -0.0 198,206 - GFF1558 0.25 +0.8 198,206 - GFF1558 0.25 -0.4 198,206 - GFF1558 0.25 -0.1 198,256 + GFF1558 0.28 -0.3 198,257 - GFF1558 0.28 +0.1 198,257 - GFF1558 0.28 +0.3 198,257 - GFF1558 0.28 +0.3 198,260 - GFF1558 0.29 +0.3 198,286 + GFF1558 0.30 -0.5 198,287 - GFF1558 0.30 +1.1 198,296 - GFF1558 0.31 -0.3 198,296 - GFF1558 0.31 -0.7 198,320 - GFF1558 0.33 +0.3 198,775 + GFF1558 0.63 -0.3 198,811 - GFF1558 0.65 +0.1 199,189 + -0.2 199,189 + +0.1 199,190 - -1.3 199,190 - -0.3 199,334 + -0.2 199,335 - -0.4 199,635 + GFF1559 0.15 -0.7 199,636 - GFF1559 0.15 -0.6 199,698 - GFF1559 0.21 +0.3 199,698 - GFF1559 0.21 -0.2 199,698 - GFF1559 0.21 +0.2 199,818 + GFF1559 0.33 -1.9 200,334 + GFF1559 0.82 -1.8 200,334 + GFF1559 0.82 -0.3 200,334 + GFF1559 0.82 -1.5
Or see this region's nucleotide sequence