Strain Fitness in Xanthobacter sp. DMC5 around GFF1554

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1552 and GFF1553 are separated by 19 nucleotidesGFF1553 and GFF1554 are separated by 7 nucleotidesGFF1554 and GFF1555 are separated by 154 nucleotides GFF1552 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 191,159 to 191,935 GFF1552 GFF1553 - Inner membrane ABC transporter permease protein YcjP, at 191,955 to 192,794 GFF1553 GFF1554 - Inner membrane ABC transporter permease protein YcjO, at 192,802 to 193,662 GFF1554 GFF1555 - hypothetical protein, at 193,817 to 195,145 GFF1555 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 191.995 kb on + strandat 191.995 kb on + strandat 191.996 kb on - strandat 192.151 kb on + strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.152 kb on - strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.155 kb on + strand, within GFF1553at 192.156 kb on - strand, within GFF1553at 192.156 kb on - strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.157 kb on + strand, within GFF1553at 192.158 kb on - strand, within GFF1553at 192.198 kb on - strand, within GFF1553at 192.198 kb on - strand, within GFF1553at 192.404 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.445 kb on + strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.446 kb on - strand, within GFF1553at 192.451 kb on + strand, within GFF1553at 192.509 kb on - strand, within GFF1553at 192.589 kb on + strand, within GFF1553at 192.590 kb on - strand, within GFF1553at 192.615 kb on - strand, within GFF1553at 192.617 kb on - strand, within GFF1553at 192.703 kb on + strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.704 kb on - strand, within GFF1553at 192.721 kb on + strandat 192.722 kb on - strandat 192.722 kb on - strandat 192.748 kb on + strandat 192.748 kb on + strandat 192.833 kb on + strandat 192.833 kb on + strandat 192.833 kb on + strandat 192.834 kb on - strandat 192.923 kb on + strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 193.116 kb on - strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.190 kb on - strand, within GFF1554at 193.340 kb on + strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.435 kb on - strand, within GFF1554at 193.451 kb on + strand, within GFF1554at 193.508 kb on + strand, within GFF1554at 193.559 kb on + strand, within GFF1554at 193.560 kb on - strand, within GFF1554at 193.581 kb on - strandat 193.599 kb on + strandat 193.641 kb on - strandat 193.641 kb on - strandat 193.641 kb on - strandat 193.931 kb on + strandat 193.978 kb on - strand, within GFF1555at 194.014 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.136 kb on + strand, within GFF1555at 194.136 kb on + strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.214 kb on + strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.415 kb on + strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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191,995 + +0.2
191,995 + -0.6
191,996 - -0.3
192,151 + GFF1553 0.23 +0.5
192,152 - GFF1553 0.23 -0.3
192,152 - GFF1553 0.23 -0.0
192,152 - GFF1553 0.23 +0.2
192,155 + GFF1553 0.24 +0.2
192,155 + GFF1553 0.24 +0.3
192,155 + GFF1553 0.24 -1.0
192,155 + GFF1553 0.24 -0.7
192,155 + GFF1553 0.24 +1.3
192,156 - GFF1553 0.24 -1.3
192,156 - GFF1553 0.24 -0.0
192,157 + GFF1553 0.24 -1.6
192,157 + GFF1553 0.24 -0.1
192,157 + GFF1553 0.24 -0.0
192,158 - GFF1553 0.24 -0.3
192,198 - GFF1553 0.29 -0.7
192,198 - GFF1553 0.29 -0.6
192,404 + GFF1553 0.53 +0.3
192,445 + GFF1553 0.58 +0.4
192,445 + GFF1553 0.58 +0.2
192,445 + GFF1553 0.58 +0.7
192,445 + GFF1553 0.58 +1.5
192,445 + GFF1553 0.58 -0.6
192,445 + GFF1553 0.58 -0.3
192,445 + GFF1553 0.58 +0.7
192,445 + GFF1553 0.58 +1.0
192,445 + GFF1553 0.58 -0.4
192,445 + GFF1553 0.58 -0.1
192,445 + GFF1553 0.58 +1.0
192,445 + GFF1553 0.58 -0.6
192,446 - GFF1553 0.58 +0.8
192,446 - GFF1553 0.58 +2.3
192,446 - GFF1553 0.58 -0.2
192,446 - GFF1553 0.58 +0.3
192,446 - GFF1553 0.58 -0.5
192,451 + GFF1553 0.59 -1.9
192,509 - GFF1553 0.66 -1.8
192,589 + GFF1553 0.75 -0.2
192,590 - GFF1553 0.76 +0.3
192,615 - GFF1553 0.79 -0.3
192,617 - GFF1553 0.79 +1.0
192,703 + GFF1553 0.89 -0.3
192,704 - GFF1553 0.89 +1.3
192,704 - GFF1553 0.89 +1.0
192,704 - GFF1553 0.89 -0.4
192,721 + +0.7
192,722 - +0.1
192,722 - -1.4
192,748 + +0.2
192,748 + +0.3
192,833 + +1.2
192,833 + -0.8
192,833 + +0.3
192,834 - +1.0
192,923 + GFF1554 0.14 +1.0
192,924 - GFF1554 0.14 -0.8
192,924 - GFF1554 0.14 +0.7
192,924 - GFF1554 0.14 +0.1
192,924 - GFF1554 0.14 -0.2
192,924 - GFF1554 0.14 +1.7
193,116 - GFF1554 0.36 -0.3
193,161 + GFF1554 0.42 -0.7
193,161 + GFF1554 0.42 +0.3
193,190 - GFF1554 0.45 +1.9
193,340 + GFF1554 0.62 -1.6
193,341 - GFF1554 0.63 -1.0
193,341 - GFF1554 0.63 +0.2
193,369 - GFF1554 0.66 -0.7
193,369 - GFF1554 0.66 -0.7
193,434 + GFF1554 0.73 +1.3
193,434 + GFF1554 0.73 -0.5
193,435 - GFF1554 0.74 -0.9
193,451 + GFF1554 0.75 -0.0
193,508 + GFF1554 0.82 -0.3
193,559 + GFF1554 0.88 +0.1
193,560 - GFF1554 0.88 +1.6
193,581 - +0.9
193,599 + +0.2
193,641 - -1.4
193,641 - -0.3
193,641 - -1.5
193,931 + -0.6
193,978 - GFF1555 0.12 -0.7
194,014 + GFF1555 0.15 -0.0
194,079 + GFF1555 0.20 +0.3
194,079 + GFF1555 0.20 +0.2
194,079 + GFF1555 0.20 +0.7
194,080 - GFF1555 0.20 -0.7
194,080 - GFF1555 0.20 +0.4
194,080 - GFF1555 0.20 -1.4
194,080 - GFF1555 0.20 +1.1
194,080 - GFF1555 0.20 +0.5
194,136 + GFF1555 0.24 -0.2
194,136 + GFF1555 0.24 +0.7
194,137 - GFF1555 0.24 -0.6
194,137 - GFF1555 0.24 +1.2
194,137 - GFF1555 0.24 +0.5
194,214 + GFF1555 0.30 -0.8
194,215 - GFF1555 0.30 +2.1
194,215 - GFF1555 0.30 -0.8
194,256 + GFF1555 0.33 +0.5
194,256 + GFF1555 0.33 -1.9
194,256 + GFF1555 0.33 -0.6
194,256 + GFF1555 0.33 +1.0
194,257 - GFF1555 0.33 -1.5
194,257 - GFF1555 0.33 +0.1
194,271 + GFF1555 0.34 +0.1
194,271 + GFF1555 0.34 +0.9
194,271 + GFF1555 0.34 -0.9
194,272 - GFF1555 0.34 -0.0
194,272 - GFF1555 0.34 +1.0
194,328 + GFF1555 0.38 +1.0
194,328 + GFF1555 0.38 +1.0
194,328 + GFF1555 0.38 -0.8
194,328 + GFF1555 0.38 +0.7
194,415 + GFF1555 0.45 +0.0
194,416 - GFF1555 0.45 +0.3
194,416 - GFF1555 0.45 +0.1
194,439 + GFF1555 0.47 -1.1
194,439 + GFF1555 0.47 +1.1
194,440 - GFF1555 0.47 -0.3
194,440 - GFF1555 0.47 -0.5
194,440 - GFF1555 0.47 -0.2

Or see this region's nucleotide sequence