Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1547 and GFF1548 are separated by 17 nucleotides GFF1548 and GFF1549 are separated by 89 nucleotides GFF1549 and GFF1550 are separated by 68 nucleotides GFF1550 and GFF1551 are separated by 55 nucleotides
GFF1547 - Aliphatic amidase expression-regulating protein, at 186,731 to 187,852
GFF1547
GFF1548 - hypothetical protein, at 187,870 to 188,517
GFF1548
GFF1549 - hypothetical protein, at 188,607 to 189,659
GFF1549
GFF1550 - hypothetical protein, at 189,728 to 190,024
GFF1550
GFF1551 - Glycerol dehydrogenase, at 190,080 to 191,162
GFF1551
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 187.737 kb on - strand, within GFF1547 at 187.784 kb on + strand at 187.784 kb on + strand at 187.784 kb on + strand at 187.784 kb on + strand at 188.082 kb on - strand, within GFF1548 at 188.105 kb on + strand, within GFF1548 at 188.105 kb on + strand, within GFF1548 at 188.106 kb on - strand, within GFF1548 at 188.106 kb on - strand, within GFF1548 at 188.109 kb on + strand, within GFF1548 at 188.109 kb on + strand, within GFF1548 at 188.110 kb on - strand, within GFF1548 at 188.110 kb on - strand, within GFF1548 at 188.212 kb on + strand, within GFF1548 at 188.213 kb on - strand, within GFF1548 at 188.227 kb on + strand, within GFF1548 at 188.228 kb on - strand, within GFF1548 at 188.228 kb on - strand, within GFF1548 at 188.257 kb on + strand, within GFF1548 at 188.257 kb on + strand, within GFF1548 at 188.258 kb on - strand, within GFF1548 at 188.258 kb on - strand, within GFF1548 at 188.272 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.383 kb on + strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.384 kb on - strand, within GFF1548 at 188.446 kb on + strand, within GFF1548 at 188.447 kb on - strand, within GFF1548 at 188.447 kb on - strand, within GFF1548 at 188.448 kb on + strand, within GFF1548 at 188.449 kb on - strand, within GFF1548 at 188.449 kb on - strand, within GFF1548 at 188.650 kb on - strand at 188.760 kb on + strand, within GFF1549 at 188.760 kb on + strand, within GFF1549 at 188.760 kb on + strand, within GFF1549 at 188.760 kb on + strand, within GFF1549 at 188.760 kb on + strand, within GFF1549 at 188.761 kb on - strand, within GFF1549 at 188.766 kb on + strand, within GFF1549 at 188.766 kb on + strand, within GFF1549 at 188.767 kb on - strand, within GFF1549 at 188.767 kb on - strand, within GFF1549 at 188.767 kb on - strand, within GFF1549 at 188.773 kb on - strand, within GFF1549 at 188.781 kb on + strand, within GFF1549 at 188.967 kb on + strand, within GFF1549 at 188.967 kb on + strand, within GFF1549 at 188.968 kb on - strand, within GFF1549 at 188.968 kb on - strand, within GFF1549 at 189.153 kb on + strand, within GFF1549 at 189.153 kb on + strand, within GFF1549 at 189.222 kb on + strand, within GFF1549 at 189.223 kb on - strand, within GFF1549 at 189.225 kb on + strand, within GFF1549 at 189.225 kb on + strand, within GFF1549 at 189.306 kb on + strand, within GFF1549 at 189.306 kb on + strand, within GFF1549 at 189.306 kb on + strand, within GFF1549 at 189.307 kb on - strand, within GFF1549 at 189.499 kb on - strand, within GFF1549 at 189.532 kb on - strand, within GFF1549 at 189.537 kb on + strand, within GFF1549 at 189.537 kb on + strand, within GFF1549 at 189.555 kb on + strand at 189.555 kb on + strand at 189.555 kb on + strand at 189.555 kb on + strand at 189.555 kb on + strand at 189.556 kb on - strand at 189.556 kb on - strand at 189.556 kb on - strand at 189.556 kb on - strand at 189.730 kb on - strand at 189.780 kb on + strand, within GFF1550 at 189.780 kb on + strand, within GFF1550 at 189.780 kb on + strand, within GFF1550 at 189.781 kb on - strand, within GFF1550 at 189.781 kb on - strand, within GFF1550 at 189.890 kb on - strand, within GFF1550 at 189.890 kb on - strand, within GFF1550 at 189.928 kb on - strand, within GFF1550 at 189.970 kb on - strand, within GFF1550 at 190.056 kb on + strand at 190.068 kb on + strand at 190.068 kb on + strand at 190.068 kb on + strand at 190.069 kb on - strand at 190.069 kb on - strand at 190.069 kb on - strand at 190.163 kb on + strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.165 kb on + strand at 190.165 kb on + strand at 190.165 kb on + strand at 190.166 kb on - strand at 190.264 kb on + strand, within GFF1551 at 190.264 kb on + strand, within GFF1551 at 190.543 kb on + strand, within GFF1551 at 190.544 kb on - strand, within GFF1551 at 190.544 kb on - strand, within GFF1551 at 190.594 kb on - strand, within GFF1551
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 187,737 - GFF1547 0.90 -0.4 187,784 + +0.1 187,784 + -0.0 187,784 + -0.0 187,784 + -3.2 188,082 - GFF1548 0.33 -1.1 188,105 + GFF1548 0.36 +0.1 188,105 + GFF1548 0.36 -0.5 188,106 - GFF1548 0.36 +0.8 188,106 - GFF1548 0.36 -0.3 188,109 + GFF1548 0.37 -0.2 188,109 + GFF1548 0.37 -0.3 188,110 - GFF1548 0.37 -0.1 188,110 - GFF1548 0.37 -0.7 188,212 + GFF1548 0.53 +0.8 188,213 - GFF1548 0.53 -0.5 188,227 + GFF1548 0.55 -0.7 188,228 - GFF1548 0.55 +0.1 188,228 - GFF1548 0.55 +0.2 188,257 + GFF1548 0.60 -0.1 188,257 + GFF1548 0.60 -0.9 188,258 - GFF1548 0.60 -0.0 188,258 - GFF1548 0.60 +0.3 188,272 + GFF1548 0.62 -1.0 188,383 + GFF1548 0.79 -0.3 188,383 + GFF1548 0.79 +0.5 188,383 + GFF1548 0.79 +0.3 188,383 + GFF1548 0.79 +0.4 188,383 + GFF1548 0.79 -0.1 188,383 + GFF1548 0.79 -0.2 188,384 - GFF1548 0.79 +0.3 188,384 - GFF1548 0.79 -0.8 188,384 - GFF1548 0.79 -0.9 188,384 - GFF1548 0.79 -0.7 188,384 - GFF1548 0.79 -0.1 188,384 - GFF1548 0.79 +0.7 188,446 + GFF1548 0.89 -1.1 188,447 - GFF1548 0.89 +1.0 188,447 - GFF1548 0.89 +1.7 188,448 + GFF1548 0.89 -0.8 188,449 - GFF1548 0.89 +0.3 188,449 - GFF1548 0.89 -0.6 188,650 - -1.4 188,760 + GFF1549 0.15 -0.7 188,760 + GFF1549 0.15 -0.9 188,760 + GFF1549 0.15 -1.8 188,760 + GFF1549 0.15 -0.1 188,760 + GFF1549 0.15 +0.4 188,761 - GFF1549 0.15 -0.0 188,766 + GFF1549 0.15 -0.8 188,766 + GFF1549 0.15 -0.1 188,767 - GFF1549 0.15 +1.3 188,767 - GFF1549 0.15 -0.9 188,767 - GFF1549 0.15 -0.9 188,773 - GFF1549 0.16 -2.4 188,781 + GFF1549 0.17 +0.7 188,967 + GFF1549 0.34 +0.3 188,967 + GFF1549 0.34 +0.8 188,968 - GFF1549 0.34 -0.2 188,968 - GFF1549 0.34 -0.5 189,153 + GFF1549 0.52 -1.0 189,153 + GFF1549 0.52 -1.1 189,222 + GFF1549 0.58 -1.6 189,223 - GFF1549 0.58 +0.4 189,225 + GFF1549 0.59 +1.1 189,225 + GFF1549 0.59 +0.7 189,306 + GFF1549 0.66 -2.0 189,306 + GFF1549 0.66 -0.7 189,306 + GFF1549 0.66 -0.4 189,307 - GFF1549 0.66 +0.3 189,499 - GFF1549 0.85 -0.9 189,532 - GFF1549 0.88 -1.7 189,537 + GFF1549 0.88 -1.0 189,537 + GFF1549 0.88 -0.4 189,555 + +0.5 189,555 + +0.3 189,555 + -2.2 189,555 + +0.7 189,555 + -0.8 189,556 - -0.6 189,556 - -0.4 189,556 - -0.7 189,556 - +0.4 189,730 - +0.4 189,780 + GFF1550 0.18 -0.0 189,780 + GFF1550 0.18 +0.0 189,780 + GFF1550 0.18 -1.4 189,781 - GFF1550 0.18 +0.3 189,781 - GFF1550 0.18 -0.7 189,890 - GFF1550 0.55 +0.3 189,890 - GFF1550 0.55 +0.2 189,928 - GFF1550 0.67 +0.2 189,970 - GFF1550 0.81 -1.5 190,056 + -0.3 190,068 + +0.0 190,068 + -1.6 190,068 + +0.0 190,069 - -0.3 190,069 - -0.5 190,069 - -0.1 190,163 + +0.8 190,164 - +0.0 190,164 - -1.0 190,165 + -0.1 190,165 + -0.2 190,165 + -0.9 190,166 - -0.7 190,264 + GFF1551 0.17 +0.5 190,264 + GFF1551 0.17 -0.5 190,543 + GFF1551 0.43 -0.2 190,544 - GFF1551 0.43 +1.5 190,544 - GFF1551 0.43 -0.6 190,594 - GFF1551 0.47 -0.0
Or see this region's nucleotide sequence