Strain Fitness in Xanthobacter sp. DMC5 around GFF1548

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1547 and GFF1548 are separated by 17 nucleotidesGFF1548 and GFF1549 are separated by 89 nucleotides GFF1547 - Aliphatic amidase expression-regulating protein, at 186,731 to 187,852 GFF1547 GFF1548 - hypothetical protein, at 187,870 to 188,517 GFF1548 GFF1549 - hypothetical protein, at 188,607 to 189,659 GFF1549 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1at 186.872 kb on + strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.063 kb on + strand, within GFF1547at 187.064 kb on - strand, within GFF1547at 187.064 kb on - strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.083 kb on - strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.208 kb on + strand, within GFF1547at 187.457 kb on + strand, within GFF1547at 187.518 kb on - strand, within GFF1547at 187.518 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.737 kb on - strand, within GFF1547at 187.784 kb on + strandat 187.784 kb on + strandat 187.784 kb on + strandat 187.784 kb on + strandat 188.082 kb on - strand, within GFF1548at 188.105 kb on + strand, within GFF1548at 188.105 kb on + strand, within GFF1548at 188.106 kb on - strand, within GFF1548at 188.106 kb on - strand, within GFF1548at 188.109 kb on + strand, within GFF1548at 188.109 kb on + strand, within GFF1548at 188.110 kb on - strand, within GFF1548at 188.110 kb on - strand, within GFF1548at 188.212 kb on + strand, within GFF1548at 188.213 kb on - strand, within GFF1548at 188.227 kb on + strand, within GFF1548at 188.228 kb on - strand, within GFF1548at 188.228 kb on - strand, within GFF1548at 188.257 kb on + strand, within GFF1548at 188.257 kb on + strand, within GFF1548at 188.258 kb on - strand, within GFF1548at 188.258 kb on - strand, within GFF1548at 188.272 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.446 kb on + strand, within GFF1548at 188.447 kb on - strand, within GFF1548at 188.447 kb on - strand, within GFF1548at 188.448 kb on + strand, within GFF1548at 188.449 kb on - strand, within GFF1548at 188.449 kb on - strand, within GFF1548at 188.650 kb on - strandat 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.761 kb on - strand, within GFF1549at 188.766 kb on + strand, within GFF1549at 188.766 kb on + strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.773 kb on - strand, within GFF1549at 188.781 kb on + strand, within GFF1549at 188.967 kb on + strand, within GFF1549at 188.967 kb on + strand, within GFF1549at 188.968 kb on - strand, within GFF1549at 188.968 kb on - strand, within GFF1549at 189.153 kb on + strand, within GFF1549at 189.153 kb on + strand, within GFF1549at 189.222 kb on + strand, within GFF1549at 189.223 kb on - strand, within GFF1549at 189.225 kb on + strand, within GFF1549at 189.225 kb on + strand, within GFF1549at 189.306 kb on + strand, within GFF1549at 189.306 kb on + strand, within GFF1549at 189.306 kb on + strand, within GFF1549at 189.307 kb on - strand, within GFF1549at 189.499 kb on - strand, within GFF1549

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
186,872 + GFF1547 0.13 -0.9
186,873 - GFF1547 0.13 -1.5
186,873 - GFF1547 0.13 +0.3
186,873 - GFF1547 0.13 -0.0
186,875 - GFF1547 0.13 -1.0
186,875 - GFF1547 0.13 +0.0
186,875 - GFF1547 0.13 +0.4
186,875 - GFF1547 0.13 +0.2
186,929 + GFF1547 0.18 -0.7
186,929 + GFF1547 0.18 -1.8
186,930 - GFF1547 0.18 -1.7
186,930 - GFF1547 0.18 +0.9
186,930 - GFF1547 0.18 -0.0
186,930 - GFF1547 0.18 -0.6
187,037 + GFF1547 0.27 -0.2
187,037 + GFF1547 0.27 -0.4
187,037 + GFF1547 0.27 -0.8
187,037 + GFF1547 0.27 -0.0
187,038 - GFF1547 0.27 +0.3
187,038 - GFF1547 0.27 +0.8
187,063 + GFF1547 0.30 -1.3
187,064 - GFF1547 0.30 -0.1
187,064 - GFF1547 0.30 -0.5
187,082 + GFF1547 0.31 -1.9
187,082 + GFF1547 0.31 +1.0
187,082 + GFF1547 0.31 -0.6
187,083 - GFF1547 0.31 +0.1
187,130 + GFF1547 0.36 -0.9
187,130 + GFF1547 0.36 -0.7
187,130 + GFF1547 0.36 -0.2
187,130 + GFF1547 0.36 -2.1
187,131 - GFF1547 0.36 +0.3
187,131 - GFF1547 0.36 +0.5
187,131 - GFF1547 0.36 +0.6
187,208 + GFF1547 0.43 -0.0
187,457 + GFF1547 0.65 -1.4
187,518 - GFF1547 0.70 +0.3
187,518 - GFF1547 0.70 -0.4
187,560 - GFF1547 0.74 -1.8
187,560 - GFF1547 0.74 -1.4
187,560 - GFF1547 0.74 -0.5
187,737 - GFF1547 0.90 -0.4
187,784 + +0.1
187,784 + -0.0
187,784 + -0.0
187,784 + -3.2
188,082 - GFF1548 0.33 -1.1
188,105 + GFF1548 0.36 +0.1
188,105 + GFF1548 0.36 -0.5
188,106 - GFF1548 0.36 +0.8
188,106 - GFF1548 0.36 -0.3
188,109 + GFF1548 0.37 -0.2
188,109 + GFF1548 0.37 -0.3
188,110 - GFF1548 0.37 -0.1
188,110 - GFF1548 0.37 -0.7
188,212 + GFF1548 0.53 +0.8
188,213 - GFF1548 0.53 -0.5
188,227 + GFF1548 0.55 -0.7
188,228 - GFF1548 0.55 +0.1
188,228 - GFF1548 0.55 +0.2
188,257 + GFF1548 0.60 -0.1
188,257 + GFF1548 0.60 -0.9
188,258 - GFF1548 0.60 -0.0
188,258 - GFF1548 0.60 +0.3
188,272 + GFF1548 0.62 -1.0
188,383 + GFF1548 0.79 -0.3
188,383 + GFF1548 0.79 +0.5
188,383 + GFF1548 0.79 +0.3
188,383 + GFF1548 0.79 +0.4
188,383 + GFF1548 0.79 -0.1
188,383 + GFF1548 0.79 -0.2
188,384 - GFF1548 0.79 +0.3
188,384 - GFF1548 0.79 -0.8
188,384 - GFF1548 0.79 -0.9
188,384 - GFF1548 0.79 -0.7
188,384 - GFF1548 0.79 -0.1
188,384 - GFF1548 0.79 +0.7
188,446 + GFF1548 0.89 -1.1
188,447 - GFF1548 0.89 +1.0
188,447 - GFF1548 0.89 +1.7
188,448 + GFF1548 0.89 -0.8
188,449 - GFF1548 0.89 +0.3
188,449 - GFF1548 0.89 -0.6
188,650 - -1.4
188,760 + GFF1549 0.15 -0.7
188,760 + GFF1549 0.15 -0.9
188,760 + GFF1549 0.15 -1.8
188,760 + GFF1549 0.15 -0.1
188,760 + GFF1549 0.15 +0.4
188,761 - GFF1549 0.15 -0.0
188,766 + GFF1549 0.15 -0.8
188,766 + GFF1549 0.15 -0.1
188,767 - GFF1549 0.15 +1.3
188,767 - GFF1549 0.15 -0.9
188,767 - GFF1549 0.15 -0.9
188,773 - GFF1549 0.16 -2.4
188,781 + GFF1549 0.17 +0.7
188,967 + GFF1549 0.34 +0.3
188,967 + GFF1549 0.34 +0.8
188,968 - GFF1549 0.34 -0.2
188,968 - GFF1549 0.34 -0.5
189,153 + GFF1549 0.52 -1.0
189,153 + GFF1549 0.52 -1.1
189,222 + GFF1549 0.58 -1.6
189,223 - GFF1549 0.58 +0.4
189,225 + GFF1549 0.59 +1.1
189,225 + GFF1549 0.59 +0.7
189,306 + GFF1549 0.66 -2.0
189,306 + GFF1549 0.66 -0.7
189,306 + GFF1549 0.66 -0.4
189,307 - GFF1549 0.66 +0.3
189,499 - GFF1549 0.85 -0.9

Or see this region's nucleotide sequence