Strain Fitness in Xanthobacter sp. DMC5 around GFF1547

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1546 and GFF1547 are separated by 655 nucleotidesGFF1547 and GFF1548 are separated by 17 nucleotidesGFF1548 and GFF1549 are separated by 89 nucleotides GFF1546 - Cobalt-containing nitrile hydratase subunit beta, at 185,401 to 186,075 GFF1546 GFF1547 - Aliphatic amidase expression-regulating protein, at 186,731 to 187,852 GFF1547 GFF1548 - hypothetical protein, at 187,870 to 188,517 GFF1548 GFF1549 - hypothetical protein, at 188,607 to 189,659 GFF1549 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1at 185.876 kb on + strand, within GFF1546at 185.876 kb on + strand, within GFF1546at 185.877 kb on - strand, within GFF1546at 185.886 kb on - strand, within GFF1546at 186.270 kb on + strandat 186.271 kb on - strandat 186.271 kb on - strandat 186.405 kb on + strandat 186.406 kb on - strandat 186.527 kb on + strandat 186.530 kb on + strandat 186.530 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.699 kb on - strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.872 kb on + strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.063 kb on + strand, within GFF1547at 187.064 kb on - strand, within GFF1547at 187.064 kb on - strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.082 kb on + strand, within GFF1547at 187.083 kb on - strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.130 kb on + strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.131 kb on - strand, within GFF1547at 187.208 kb on + strand, within GFF1547at 187.457 kb on + strand, within GFF1547at 187.518 kb on - strand, within GFF1547at 187.518 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.560 kb on - strand, within GFF1547at 187.737 kb on - strand, within GFF1547at 187.784 kb on + strandat 187.784 kb on + strandat 187.784 kb on + strandat 187.784 kb on + strandat 188.082 kb on - strand, within GFF1548at 188.105 kb on + strand, within GFF1548at 188.105 kb on + strand, within GFF1548at 188.106 kb on - strand, within GFF1548at 188.106 kb on - strand, within GFF1548at 188.109 kb on + strand, within GFF1548at 188.109 kb on + strand, within GFF1548at 188.110 kb on - strand, within GFF1548at 188.110 kb on - strand, within GFF1548at 188.212 kb on + strand, within GFF1548at 188.213 kb on - strand, within GFF1548at 188.227 kb on + strand, within GFF1548at 188.228 kb on - strand, within GFF1548at 188.228 kb on - strand, within GFF1548at 188.257 kb on + strand, within GFF1548at 188.257 kb on + strand, within GFF1548at 188.258 kb on - strand, within GFF1548at 188.258 kb on - strand, within GFF1548at 188.272 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.383 kb on + strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.384 kb on - strand, within GFF1548at 188.446 kb on + strand, within GFF1548at 188.447 kb on - strand, within GFF1548at 188.447 kb on - strand, within GFF1548at 188.448 kb on + strand, within GFF1548at 188.449 kb on - strand, within GFF1548at 188.449 kb on - strand, within GFF1548at 188.650 kb on - strandat 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.760 kb on + strand, within GFF1549at 188.761 kb on - strand, within GFF1549at 188.766 kb on + strand, within GFF1549at 188.766 kb on + strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.767 kb on - strand, within GFF1549at 188.773 kb on - strand, within GFF1549at 188.781 kb on + strand, within GFF1549

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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185,876 + GFF1546 0.70 -0.2
185,876 + GFF1546 0.70 +0.5
185,877 - GFF1546 0.71 -0.4
185,886 - GFF1546 0.72 -2.5
186,270 + +0.7
186,271 - +0.4
186,271 - -1.9
186,405 + +0.0
186,406 - -0.5
186,527 + -1.7
186,530 + +0.3
186,530 + +0.8
186,641 + +1.1
186,641 + -0.7
186,641 + -0.4
186,641 + -0.1
186,641 + -1.1
186,641 + +0.3
186,642 - -1.1
186,642 - -0.4
186,642 - -1.5
186,642 - -0.3
186,642 - -0.3
186,699 - -0.3
186,752 + -0.4
186,752 + -1.0
186,752 + -1.6
186,752 + -1.1
186,872 + GFF1547 0.13 -0.9
186,873 - GFF1547 0.13 -1.5
186,873 - GFF1547 0.13 +0.3
186,873 - GFF1547 0.13 -0.0
186,875 - GFF1547 0.13 -1.0
186,875 - GFF1547 0.13 +0.0
186,875 - GFF1547 0.13 +0.4
186,875 - GFF1547 0.13 +0.2
186,929 + GFF1547 0.18 -0.7
186,929 + GFF1547 0.18 -1.8
186,930 - GFF1547 0.18 -1.7
186,930 - GFF1547 0.18 +0.9
186,930 - GFF1547 0.18 -0.0
186,930 - GFF1547 0.18 -0.6
187,037 + GFF1547 0.27 -0.2
187,037 + GFF1547 0.27 -0.4
187,037 + GFF1547 0.27 -0.8
187,037 + GFF1547 0.27 -0.0
187,038 - GFF1547 0.27 +0.3
187,038 - GFF1547 0.27 +0.8
187,063 + GFF1547 0.30 -1.3
187,064 - GFF1547 0.30 -0.1
187,064 - GFF1547 0.30 -0.5
187,082 + GFF1547 0.31 -1.9
187,082 + GFF1547 0.31 +1.0
187,082 + GFF1547 0.31 -0.6
187,083 - GFF1547 0.31 +0.1
187,130 + GFF1547 0.36 -0.9
187,130 + GFF1547 0.36 -0.7
187,130 + GFF1547 0.36 -0.2
187,130 + GFF1547 0.36 -2.1
187,131 - GFF1547 0.36 +0.3
187,131 - GFF1547 0.36 +0.5
187,131 - GFF1547 0.36 +0.6
187,208 + GFF1547 0.43 -0.0
187,457 + GFF1547 0.65 -1.4
187,518 - GFF1547 0.70 +0.3
187,518 - GFF1547 0.70 -0.4
187,560 - GFF1547 0.74 -1.8
187,560 - GFF1547 0.74 -1.4
187,560 - GFF1547 0.74 -0.5
187,737 - GFF1547 0.90 -0.4
187,784 + +0.1
187,784 + -0.0
187,784 + -0.0
187,784 + -3.2
188,082 - GFF1548 0.33 -1.1
188,105 + GFF1548 0.36 +0.1
188,105 + GFF1548 0.36 -0.5
188,106 - GFF1548 0.36 +0.8
188,106 - GFF1548 0.36 -0.3
188,109 + GFF1548 0.37 -0.2
188,109 + GFF1548 0.37 -0.3
188,110 - GFF1548 0.37 -0.1
188,110 - GFF1548 0.37 -0.7
188,212 + GFF1548 0.53 +0.8
188,213 - GFF1548 0.53 -0.5
188,227 + GFF1548 0.55 -0.7
188,228 - GFF1548 0.55 +0.1
188,228 - GFF1548 0.55 +0.2
188,257 + GFF1548 0.60 -0.1
188,257 + GFF1548 0.60 -0.9
188,258 - GFF1548 0.60 -0.0
188,258 - GFF1548 0.60 +0.3
188,272 + GFF1548 0.62 -1.0
188,383 + GFF1548 0.79 -0.3
188,383 + GFF1548 0.79 +0.5
188,383 + GFF1548 0.79 +0.3
188,383 + GFF1548 0.79 +0.4
188,383 + GFF1548 0.79 -0.1
188,383 + GFF1548 0.79 -0.2
188,384 - GFF1548 0.79 +0.3
188,384 - GFF1548 0.79 -0.8
188,384 - GFF1548 0.79 -0.9
188,384 - GFF1548 0.79 -0.7
188,384 - GFF1548 0.79 -0.1
188,384 - GFF1548 0.79 +0.7
188,446 + GFF1548 0.89 -1.1
188,447 - GFF1548 0.89 +1.0
188,447 - GFF1548 0.89 +1.7
188,448 + GFF1548 0.89 -0.8
188,449 - GFF1548 0.89 +0.3
188,449 - GFF1548 0.89 -0.6
188,650 - -1.4
188,760 + GFF1549 0.15 -0.7
188,760 + GFF1549 0.15 -0.9
188,760 + GFF1549 0.15 -1.8
188,760 + GFF1549 0.15 -0.1
188,760 + GFF1549 0.15 +0.4
188,761 - GFF1549 0.15 -0.0
188,766 + GFF1549 0.15 -0.8
188,766 + GFF1549 0.15 -0.1
188,767 - GFF1549 0.15 +1.3
188,767 - GFF1549 0.15 -0.9
188,767 - GFF1549 0.15 -0.9
188,773 - GFF1549 0.16 -2.4
188,781 + GFF1549 0.17 +0.7

Or see this region's nucleotide sequence