Strain Fitness in Xanthobacter sp. DMC5 around GFF1536

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1534 and GFF1535 overlap by 4 nucleotidesGFF1535 and GFF1536 are separated by 3 nucleotidesGFF1536 and GFF1537 are separated by 38 nucleotidesGFF1537 and GFF1538 are separated by 61 nucleotides GFF1534 - Enterobactin exporter EntS, at 175,378 to 176,988 GFF1534 GFF1535 - hypothetical protein, at 176,985 to 177,422 GFF1535 GFF1536 - Imidazolonepropionase, at 177,426 to 179,291 GFF1536 GFF1537 - hypothetical protein, at 179,330 to 179,617 GFF1537 GFF1538 - Non-heme chloroperoxidase, at 179,679 to 180,692 GFF1538 Position (kb) 177 178 179 180Strain fitness (log2 ratio) -2 -1 0 1at 176.435 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.649 kb on + strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 176.650 kb on - strand, within GFF1534at 177.022 kb on + strandat 177.023 kb on - strandat 177.023 kb on - strandat 177.328 kb on + strand, within GFF1535at 177.601 kb on + strandat 177.601 kb on + strandat 177.602 kb on - strandat 177.757 kb on + strand, within GFF1536at 177.757 kb on + strand, within GFF1536at 177.758 kb on - strand, within GFF1536at 177.758 kb on - strand, within GFF1536at 177.899 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.960 kb on - strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.961 kb on + strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 177.962 kb on - strand, within GFF1536at 178.075 kb on + strand, within GFF1536at 178.076 kb on - strand, within GFF1536at 178.076 kb on - strand, within GFF1536at 178.087 kb on + strand, within GFF1536at 178.088 kb on - strand, within GFF1536at 178.088 kb on - strand, within GFF1536at 178.088 kb on - strand, within GFF1536at 178.088 kb on - strand, within GFF1536at 178.255 kb on + strand, within GFF1536at 178.255 kb on + strand, within GFF1536at 178.255 kb on + strand, within GFF1536at 178.255 kb on + strand, within GFF1536at 178.256 kb on - strand, within GFF1536at 178.256 kb on - strand, within GFF1536at 178.384 kb on + strand, within GFF1536at 178.385 kb on - strand, within GFF1536at 178.418 kb on - strand, within GFF1536at 178.418 kb on - strand, within GFF1536at 178.507 kb on + strand, within GFF1536at 178.561 kb on + strand, within GFF1536at 178.561 kb on + strand, within GFF1536at 178.562 kb on - strand, within GFF1536at 178.562 kb on - strand, within GFF1536at 178.703 kb on - strand, within GFF1536at 178.703 kb on - strand, within GFF1536at 178.804 kb on + strand, within GFF1536at 178.804 kb on + strand, within GFF1536at 178.804 kb on + strand, within GFF1536at 178.849 kb on + strand, within GFF1536at 178.850 kb on - strand, within GFF1536at 179.056 kb on + strand, within GFF1536at 179.056 kb on + strand, within GFF1536at 179.057 kb on - strand, within GFF1536at 179.565 kb on + strand, within GFF1537at 179.565 kb on + strand, within GFF1537at 179.566 kb on - strand, within GFF1537at 179.566 kb on - strand, within GFF1537at 179.566 kb on - strand, within GFF1537at 179.566 kb on - strand, within GFF1537at 179.608 kb on - strandat 179.758 kb on + strandat 179.759 kb on - strandat 179.921 kb on - strand, within GFF1538at 179.921 kb on - strand, within GFF1538at 179.921 kb on - strand, within GFF1538at 179.921 kb on - strand, within GFF1538at 180.010 kb on + strand, within GFF1538at 180.010 kb on + strand, within GFF1538at 180.010 kb on + strand, within GFF1538at 180.011 kb on - strand, within GFF1538at 180.011 kb on - strand, within GFF1538at 180.193 kb on + strand, within GFF1538at 180.193 kb on + strand, within GFF1538at 180.194 kb on - strand, within GFF1538at 180.286 kb on + strand, within GFF1538at 180.286 kb on + strand, within GFF1538at 180.286 kb on + strand, within GFF1538

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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176,435 + GFF1534 0.66 +0.1
176,649 + GFF1534 0.79 -0.9
176,649 + GFF1534 0.79 +0.6
176,649 + GFF1534 0.79 -0.7
176,649 + GFF1534 0.79 -0.1
176,649 + GFF1534 0.79 -0.0
176,649 + GFF1534 0.79 -1.8
176,649 + GFF1534 0.79 -1.3
176,650 - GFF1534 0.79 -0.3
176,650 - GFF1534 0.79 +0.2
176,650 - GFF1534 0.79 +0.3
176,650 - GFF1534 0.79 -0.1
176,650 - GFF1534 0.79 +0.2
176,650 - GFF1534 0.79 -0.1
177,022 + +1.1
177,023 - +1.3
177,023 - -1.0
177,328 + GFF1535 0.78 -0.4
177,601 + -0.1
177,601 + +0.2
177,602 - +0.8
177,757 + GFF1536 0.18 -0.0
177,757 + GFF1536 0.18 -0.7
177,758 - GFF1536 0.18 +0.7
177,758 - GFF1536 0.18 -1.4
177,899 - GFF1536 0.25 -1.0
177,960 - GFF1536 0.29 -1.7
177,960 - GFF1536 0.29 -0.2
177,960 - GFF1536 0.29 +0.7
177,961 + GFF1536 0.29 -0.1
177,961 + GFF1536 0.29 +0.1
177,961 + GFF1536 0.29 +0.1
177,962 - GFF1536 0.29 -0.2
177,962 - GFF1536 0.29 -0.6
177,962 - GFF1536 0.29 +0.1
177,962 - GFF1536 0.29 -0.7
178,075 + GFF1536 0.35 +0.7
178,076 - GFF1536 0.35 -0.2
178,076 - GFF1536 0.35 -0.6
178,087 + GFF1536 0.35 +0.4
178,088 - GFF1536 0.35 +0.6
178,088 - GFF1536 0.35 -0.3
178,088 - GFF1536 0.35 -0.0
178,088 - GFF1536 0.35 +1.3
178,255 + GFF1536 0.44 +0.1
178,255 + GFF1536 0.44 +0.6
178,255 + GFF1536 0.44 -1.8
178,255 + GFF1536 0.44 -0.6
178,256 - GFF1536 0.44 +0.3
178,256 - GFF1536 0.44 -0.0
178,384 + GFF1536 0.51 -1.9
178,385 - GFF1536 0.51 -0.1
178,418 - GFF1536 0.53 -0.6
178,418 - GFF1536 0.53 +0.3
178,507 + GFF1536 0.58 +0.6
178,561 + GFF1536 0.61 -1.2
178,561 + GFF1536 0.61 +0.3
178,562 - GFF1536 0.61 -1.3
178,562 - GFF1536 0.61 +0.1
178,703 - GFF1536 0.68 -1.7
178,703 - GFF1536 0.68 -0.7
178,804 + GFF1536 0.74 -0.3
178,804 + GFF1536 0.74 +0.1
178,804 + GFF1536 0.74 -0.4
178,849 + GFF1536 0.76 +0.2
178,850 - GFF1536 0.76 -1.0
179,056 + GFF1536 0.87 -0.9
179,056 + GFF1536 0.87 +0.2
179,057 - GFF1536 0.87 +1.2
179,565 + GFF1537 0.82 +1.5
179,565 + GFF1537 0.82 +1.3
179,566 - GFF1537 0.82 +0.4
179,566 - GFF1537 0.82 -0.1
179,566 - GFF1537 0.82 +0.3
179,566 - GFF1537 0.82 +0.3
179,608 - +0.4
179,758 + -0.7
179,759 - -0.7
179,921 - GFF1538 0.24 -0.5
179,921 - GFF1538 0.24 +0.7
179,921 - GFF1538 0.24 +0.2
179,921 - GFF1538 0.24 -0.0
180,010 + GFF1538 0.33 -0.6
180,010 + GFF1538 0.33 +1.3
180,010 + GFF1538 0.33 +1.3
180,011 - GFF1538 0.33 +0.0
180,011 - GFF1538 0.33 -0.3
180,193 + GFF1538 0.51 -0.0
180,193 + GFF1538 0.51 -0.7
180,194 - GFF1538 0.51 +0.4
180,286 + GFF1538 0.60 +0.3
180,286 + GFF1538 0.60 -0.3
180,286 + GFF1538 0.60 -0.0

Or see this region's nucleotide sequence