Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1531 and GFF1532 are separated by 17 nucleotides GFF1532 and GFF1533 are separated by 118 nucleotides
GFF1531 - Dihydroxy-acid dehydratase, at 171,145 to 172,839
GFF1531
GFF1532 - hypothetical protein, at 172,857 to 174,182
GFF1532
GFF1533 - HTH-type transcriptional regulator GntR, at 174,301 to 175,353
GFF1533
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.327 kb on - strand, within GFF1531 at 172.327 kb on - strand, within GFF1531 at 172.328 kb on + strand, within GFF1531 at 172.328 kb on + strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.350 kb on - strand, within GFF1531 at 172.544 kb on + strand, within GFF1531 at 172.544 kb on + strand, within GFF1531 at 172.545 kb on - strand, within GFF1531 at 172.545 kb on - strand, within GFF1531 at 172.671 kb on - strand at 172.671 kb on - strand at 172.739 kb on + strand at 173.092 kb on + strand, within GFF1532 at 173.092 kb on + strand, within GFF1532 at 173.093 kb on - strand, within GFF1532 at 173.093 kb on - strand, within GFF1532 at 173.095 kb on + strand, within GFF1532 at 173.095 kb on + strand, within GFF1532 at 173.096 kb on - strand, within GFF1532 at 173.323 kb on + strand, within GFF1532 at 173.488 kb on + strand, within GFF1532 at 173.875 kb on + strand, within GFF1532 at 173.875 kb on + strand, within GFF1532 at 173.876 kb on - strand, within GFF1532 at 173.876 kb on - strand, within GFF1532 at 173.887 kb on + strand, within GFF1532 at 173.999 kb on - strand, within GFF1532 at 174.056 kb on - strand at 174.241 kb on + strand at 174.241 kb on + strand at 174.242 kb on - strand at 174.265 kb on + strand at 174.265 kb on + strand at 174.266 kb on - strand at 174.463 kb on + strand, within GFF1533 at 174.463 kb on + strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.469 kb on + strand, within GFF1533 at 174.469 kb on + strand, within GFF1533 at 174.470 kb on - strand, within GFF1533 at 174.625 kb on + strand, within GFF1533 at 174.625 kb on + strand, within GFF1533 at 174.626 kb on - strand, within GFF1533 at 174.864 kb on + strand, within GFF1533 at 174.922 kb on + strand, within GFF1533 at 174.923 kb on - strand, within GFF1533
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 172,326 + GFF1531 0.70 -0.5 172,326 + GFF1531 0.70 +0.0 172,326 + GFF1531 0.70 +0.2 172,326 + GFF1531 0.70 +0.9 172,327 - GFF1531 0.70 +0.3 172,327 - GFF1531 0.70 -0.7 172,328 + GFF1531 0.70 +0.6 172,328 + GFF1531 0.70 +0.1 172,329 - GFF1531 0.70 -0.2 172,329 - GFF1531 0.70 -0.8 172,329 - GFF1531 0.70 -0.4 172,329 - GFF1531 0.70 -0.4 172,350 - GFF1531 0.71 -2.4 172,544 + GFF1531 0.83 +0.2 172,544 + GFF1531 0.83 +0.3 172,545 - GFF1531 0.83 -1.8 172,545 - GFF1531 0.83 -1.6 172,671 - +0.1 172,671 - +0.2 172,739 + -0.4 173,092 + GFF1532 0.18 -0.7 173,092 + GFF1532 0.18 +1.6 173,093 - GFF1532 0.18 -0.2 173,093 - GFF1532 0.18 +2.1 173,095 + GFF1532 0.18 -2.0 173,095 + GFF1532 0.18 -2.3 173,096 - GFF1532 0.18 -0.3 173,323 + GFF1532 0.35 -0.2 173,488 + GFF1532 0.48 -1.1 173,875 + GFF1532 0.77 +1.6 173,875 + GFF1532 0.77 +1.1 173,876 - GFF1532 0.77 +1.1 173,876 - GFF1532 0.77 +0.1 173,887 + GFF1532 0.78 +0.4 173,999 - GFF1532 0.86 -0.6 174,056 - -0.1 174,241 + -0.4 174,241 + -0.2 174,242 - +0.0 174,265 + +0.5 174,265 + +1.2 174,266 - -0.1 174,463 + GFF1533 0.15 -0.7 174,463 + GFF1533 0.15 +0.0 174,464 - GFF1533 0.15 -0.1 174,464 - GFF1533 0.15 -0.2 174,464 - GFF1533 0.15 -0.1 174,464 - GFF1533 0.15 -1.9 174,464 - GFF1533 0.15 -1.5 174,469 + GFF1533 0.16 -1.3 174,469 + GFF1533 0.16 -1.6 174,470 - GFF1533 0.16 -0.8 174,625 + GFF1533 0.31 -0.5 174,625 + GFF1533 0.31 +1.7 174,626 - GFF1533 0.31 -0.4 174,864 + GFF1533 0.53 -0.5 174,922 + GFF1533 0.59 -0.7 174,923 - GFF1533 0.59 -0.3
Or see this region's nucleotide sequence