Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1530 and GFF1531 are separated by 75 nucleotides GFF1531 and GFF1532 are separated by 17 nucleotides
GFF1530 - hypothetical protein, at 169,834 to 171,069
GFF1530
GFF1531 - Dihydroxy-acid dehydratase, at 171,145 to 172,839
GFF1531
GFF1532 - hypothetical protein, at 172,857 to 174,182
GFF1532
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.210 kb on + strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.211 kb on - strand, within GFF1530 at 170.265 kb on + strand, within GFF1530 at 170.282 kb on - strand, within GFF1530 at 170.525 kb on + strand, within GFF1530 at 170.525 kb on + strand, within GFF1530 at 170.526 kb on - strand, within GFF1530 at 170.526 kb on - strand, within GFF1530 at 170.543 kb on + strand, within GFF1530 at 170.544 kb on - strand, within GFF1530 at 170.544 kb on - strand, within GFF1530 at 170.550 kb on + strand, within GFF1530 at 170.551 kb on - strand, within GFF1530 at 170.586 kb on + strand, within GFF1530 at 170.587 kb on - strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.609 kb on + strand, within GFF1530 at 170.610 kb on - strand, within GFF1530 at 171.204 kb on - strand at 171.204 kb on - strand at 171.320 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.326 kb on + strand, within GFF1531 at 172.327 kb on - strand, within GFF1531 at 172.327 kb on - strand, within GFF1531 at 172.328 kb on + strand, within GFF1531 at 172.328 kb on + strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.329 kb on - strand, within GFF1531 at 172.350 kb on - strand, within GFF1531 at 172.544 kb on + strand, within GFF1531 at 172.544 kb on + strand, within GFF1531 at 172.545 kb on - strand, within GFF1531 at 172.545 kb on - strand, within GFF1531 at 172.671 kb on - strand at 172.671 kb on - strand at 172.739 kb on + strand at 173.092 kb on + strand, within GFF1532 at 173.092 kb on + strand, within GFF1532 at 173.093 kb on - strand, within GFF1532 at 173.093 kb on - strand, within GFF1532 at 173.095 kb on + strand, within GFF1532 at 173.095 kb on + strand, within GFF1532 at 173.096 kb on - strand, within GFF1532 at 173.323 kb on + strand, within GFF1532 at 173.488 kb on + strand, within GFF1532
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 170,210 + GFF1530 0.30 -0.1 170,211 - GFF1530 0.31 -0.3 170,211 - GFF1530 0.31 -1.4 170,211 - GFF1530 0.31 -1.0 170,265 + GFF1530 0.35 +0.3 170,282 - GFF1530 0.36 -0.5 170,525 + GFF1530 0.56 +0.1 170,525 + GFF1530 0.56 -0.2 170,526 - GFF1530 0.56 -2.4 170,526 - GFF1530 0.56 +0.3 170,543 + GFF1530 0.57 +0.7 170,544 - GFF1530 0.57 -0.4 170,544 - GFF1530 0.57 -1.0 170,550 + GFF1530 0.58 +0.9 170,551 - GFF1530 0.58 -1.5 170,586 + GFF1530 0.61 -1.1 170,587 - GFF1530 0.61 +0.7 170,609 + GFF1530 0.63 -0.1 170,609 + GFF1530 0.63 +1.1 170,609 + GFF1530 0.63 +0.5 170,609 + GFF1530 0.63 +1.3 170,610 - GFF1530 0.63 -1.4 171,204 - +0.9 171,204 - -0.3 171,320 + GFF1531 0.10 -0.4 172,326 + GFF1531 0.70 -0.5 172,326 + GFF1531 0.70 +0.0 172,326 + GFF1531 0.70 +0.2 172,326 + GFF1531 0.70 +0.9 172,327 - GFF1531 0.70 +0.3 172,327 - GFF1531 0.70 -0.7 172,328 + GFF1531 0.70 +0.6 172,328 + GFF1531 0.70 +0.1 172,329 - GFF1531 0.70 -0.2 172,329 - GFF1531 0.70 -0.8 172,329 - GFF1531 0.70 -0.4 172,329 - GFF1531 0.70 -0.4 172,350 - GFF1531 0.71 -2.4 172,544 + GFF1531 0.83 +0.2 172,544 + GFF1531 0.83 +0.3 172,545 - GFF1531 0.83 -1.8 172,545 - GFF1531 0.83 -1.6 172,671 - +0.1 172,671 - +0.2 172,739 + -0.4 173,092 + GFF1532 0.18 -0.7 173,092 + GFF1532 0.18 +1.6 173,093 - GFF1532 0.18 -0.2 173,093 - GFF1532 0.18 +2.1 173,095 + GFF1532 0.18 -2.0 173,095 + GFF1532 0.18 -2.3 173,096 - GFF1532 0.18 -0.3 173,323 + GFF1532 0.35 -0.2 173,488 + GFF1532 0.48 -1.1
Or see this region's nucleotide sequence