Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1514 and GFF1515 are separated by 198 nucleotides GFF1515 and GFF1516 are separated by 10 nucleotides GFF1516 and GFF1517 are separated by 64 nucleotides GFF1517 and GFF1518 are separated by 290 nucleotides
GFF1514 - HTH-type transcriptional regulatory protein GabR, at 153,634 to 155,115
GFF1514
GFF1515 - Nicotinamide-nucleotide amidohydrolase PncC, at 155,314 to 155,838
GFF1515
GFF1516 - P-loop guanosine triphosphatase YjiA, at 155,849 to 156,808
GFF1516
GFF1517 - hypothetical protein, at 156,873 to 157,367
GFF1517
GFF1518 - Orotidine 5'-phosphate decarboxylase, at 157,658 to 158,407
GFF1518
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 154.892 kb on + strand, within GFF1514 at 154.892 kb on + strand, within GFF1514 at 154.892 kb on + strand, within GFF1514 at 154.893 kb on - strand, within GFF1514 at 154.923 kb on - strand, within GFF1514 at 155.314 kb on - strand at 155.314 kb on - strand at 155.314 kb on - strand at 155.506 kb on + strand, within GFF1515 at 155.507 kb on - strand, within GFF1515 at 155.507 kb on - strand, within GFF1515 at 155.663 kb on - strand, within GFF1515 at 155.711 kb on - strand, within GFF1515 at 156.238 kb on - strand, within GFF1516 at 156.810 kb on - strand at 156.814 kb on + strand at 156.815 kb on - strand at 157.002 kb on - strand, within GFF1517 at 157.156 kb on + strand, within GFF1517 at 157.156 kb on + strand, within GFF1517 at 157.157 kb on - strand, within GFF1517 at 157.186 kb on - strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.355 kb on + strand at 157.381 kb on - strand at 157.576 kb on - strand at 157.621 kb on - strand at 157.788 kb on - strand, within GFF1518
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 154,892 + GFF1514 0.85 +0.4 154,892 + GFF1514 0.85 -0.1 154,892 + GFF1514 0.85 +0.2 154,893 - GFF1514 0.85 -0.2 154,923 - GFF1514 0.87 -1.5 155,314 - +1.1 155,314 - -0.2 155,314 - -1.0 155,506 + GFF1515 0.37 -1.8 155,507 - GFF1515 0.37 +1.5 155,507 - GFF1515 0.37 -0.5 155,663 - GFF1515 0.66 -1.1 155,711 - GFF1515 0.76 -0.3 156,238 - GFF1516 0.41 -1.0 156,810 - -1.0 156,814 + +0.1 156,815 - -0.7 157,002 - GFF1517 0.26 +1.0 157,156 + GFF1517 0.57 +0.2 157,156 + GFF1517 0.57 +0.5 157,157 - GFF1517 0.57 -1.1 157,186 - GFF1517 0.63 +0.5 157,285 + GFF1517 0.83 -0.7 157,285 + GFF1517 0.83 +0.1 157,285 + GFF1517 0.83 -0.7 157,355 + +0.4 157,381 - +0.8 157,576 - +0.6 157,621 - -3.2 157,788 - GFF1518 0.17 +0.5
Or see this region's nucleotide sequence