Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1513 and GFF1514 are separated by 168 nucleotides GFF1514 and GFF1515 are separated by 198 nucleotides GFF1515 and GFF1516 are separated by 10 nucleotides
GFF1513 - Long-chain-fatty-acid--CoA ligase, at 151,933 to 153,465
GFF1513
GFF1514 - HTH-type transcriptional regulatory protein GabR, at 153,634 to 155,115
GFF1514
GFF1515 - Nicotinamide-nucleotide amidohydrolase PncC, at 155,314 to 155,838
GFF1515
GFF1516 - P-loop guanosine triphosphatase YjiA, at 155,849 to 156,808
GFF1516
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1 at 152.663 kb on + strand, within GFF1513 at 152.663 kb on + strand, within GFF1513 at 152.664 kb on - strand, within GFF1513 at 152.664 kb on - strand, within GFF1513 at 152.664 kb on - strand, within GFF1513 at 152.769 kb on - strand, within GFF1513 at 152.821 kb on - strand, within GFF1513 at 152.822 kb on + strand, within GFF1513 at 152.822 kb on + strand, within GFF1513 at 153.130 kb on + strand, within GFF1513 at 153.131 kb on - strand, within GFF1513 at 153.636 kb on - strand at 153.737 kb on + strand at 153.738 kb on - strand at 153.767 kb on + strand at 153.767 kb on + strand at 153.768 kb on - strand at 153.768 kb on - strand at 153.961 kb on + strand, within GFF1514 at 153.961 kb on + strand, within GFF1514 at 154.131 kb on - strand, within GFF1514 at 154.131 kb on - strand, within GFF1514 at 154.131 kb on - strand, within GFF1514 at 154.203 kb on - strand, within GFF1514 at 154.221 kb on - strand, within GFF1514 at 154.293 kb on - strand, within GFF1514 at 154.313 kb on + strand, within GFF1514 at 154.582 kb on + strand, within GFF1514 at 154.583 kb on - strand, within GFF1514 at 154.610 kb on + strand, within GFF1514 at 154.892 kb on + strand, within GFF1514 at 154.892 kb on + strand, within GFF1514 at 154.892 kb on + strand, within GFF1514 at 154.893 kb on - strand, within GFF1514 at 154.923 kb on - strand, within GFF1514 at 155.314 kb on - strand at 155.314 kb on - strand at 155.314 kb on - strand at 155.506 kb on + strand, within GFF1515 at 155.507 kb on - strand, within GFF1515 at 155.507 kb on - strand, within GFF1515 at 155.663 kb on - strand, within GFF1515 at 155.711 kb on - strand, within GFF1515
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 152,663 + GFF1513 0.48 -1.1 152,663 + GFF1513 0.48 -1.0 152,664 - GFF1513 0.48 +1.3 152,664 - GFF1513 0.48 -0.6 152,664 - GFF1513 0.48 +0.5 152,769 - GFF1513 0.55 -0.1 152,821 - GFF1513 0.58 +0.3 152,822 + GFF1513 0.58 -0.9 152,822 + GFF1513 0.58 -0.6 153,130 + GFF1513 0.78 -0.6 153,131 - GFF1513 0.78 +1.1 153,636 - -1.0 153,737 + +0.7 153,738 - +0.5 153,767 + +0.2 153,767 + -0.0 153,768 - -1.0 153,768 - +0.3 153,961 + GFF1514 0.22 +0.3 153,961 + GFF1514 0.22 +0.3 154,131 - GFF1514 0.34 -0.2 154,131 - GFF1514 0.34 -0.2 154,131 - GFF1514 0.34 -0.1 154,203 - GFF1514 0.38 +1.2 154,221 - GFF1514 0.40 -0.5 154,293 - GFF1514 0.44 +0.6 154,313 + GFF1514 0.46 +0.8 154,582 + GFF1514 0.64 -0.4 154,583 - GFF1514 0.64 +0.0 154,610 + GFF1514 0.66 +0.1 154,892 + GFF1514 0.85 +0.4 154,892 + GFF1514 0.85 -0.1 154,892 + GFF1514 0.85 +0.2 154,893 - GFF1514 0.85 -0.2 154,923 - GFF1514 0.87 -1.5 155,314 - +1.1 155,314 - -0.2 155,314 - -1.0 155,506 + GFF1515 0.37 -1.8 155,507 - GFF1515 0.37 +1.5 155,507 - GFF1515 0.37 -0.5 155,663 - GFF1515 0.66 -1.1 155,711 - GFF1515 0.76 -0.3
Or see this region's nucleotide sequence