Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1497 and GFF1498 are separated by 102 nucleotides GFF1498 and GFF1499 are separated by 168 nucleotides GFF1499 and GFF1500 overlap by 1 nucleotides
GFF1497 - NADPH-dependent reductase BacG, at 136,041 to 136,820
GFF1497
GFF1498 - putative D-xylose utilization operon transcriptional repressor, at 136,923 to 137,636
GFF1498
GFF1499 - Taurine import ATP-binding protein TauB, at 137,805 to 138,719
GFF1499
GFF1500 - L-fuculose phosphate aldolase, at 138,719 to 139,507
GFF1500
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 137.161 kb on + strand, within GFF1498 at 137.194 kb on + strand, within GFF1498 at 137.194 kb on + strand, within GFF1498 at 137.195 kb on - strand, within GFF1498 at 137.195 kb on - strand, within GFF1498 at 137.722 kb on - strand at 137.722 kb on - strand at 137.722 kb on - strand at 137.755 kb on + strand at 137.755 kb on + strand at 137.755 kb on + strand at 137.756 kb on - strand at 137.756 kb on - strand at 137.756 kb on - strand at 137.756 kb on - strand at 137.756 kb on - strand at 137.756 kb on - strand at 137.765 kb on + strand at 137.765 kb on + strand at 137.766 kb on - strand at 137.846 kb on + strand at 137.994 kb on + strand, within GFF1499 at 138.845 kb on + strand, within GFF1500 at 138.845 kb on + strand, within GFF1500 at 138.846 kb on - strand, within GFF1500 at 138.846 kb on - strand, within GFF1500 at 138.903 kb on - strand, within GFF1500 at 138.903 kb on - strand, within GFF1500 at 139.139 kb on + strand, within GFF1500 at 139.139 kb on + strand, within GFF1500 at 139.164 kb on - strand, within GFF1500 at 139.164 kb on - strand, within GFF1500 at 139.299 kb on - strand, within GFF1500 at 139.299 kb on - strand, within GFF1500 at 139.301 kb on + strand, within GFF1500 at 139.302 kb on - strand, within GFF1500
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 137,161 + GFF1498 0.33 -1.6 137,194 + GFF1498 0.38 -2.9 137,194 + GFF1498 0.38 -1.0 137,195 - GFF1498 0.38 -0.5 137,195 - GFF1498 0.38 -1.2 137,722 - -1.7 137,722 - -1.1 137,722 - -1.7 137,755 + +0.2 137,755 + -0.9 137,755 + -1.1 137,756 - +1.3 137,756 - +1.3 137,756 - +0.5 137,756 - -0.3 137,756 - +0.7 137,756 - -0.4 137,765 + -0.2 137,765 + -1.3 137,766 - -0.8 137,846 + +2.0 137,994 + GFF1499 0.21 +1.0 138,845 + GFF1500 0.16 -1.0 138,845 + GFF1500 0.16 -0.0 138,846 - GFF1500 0.16 -0.4 138,846 - GFF1500 0.16 -0.0 138,903 - GFF1500 0.23 +0.1 138,903 - GFF1500 0.23 +0.7 139,139 + GFF1500 0.53 -0.1 139,139 + GFF1500 0.53 -1.9 139,164 - GFF1500 0.56 -0.7 139,164 - GFF1500 0.56 -0.4 139,299 - GFF1500 0.74 +0.2 139,299 - GFF1500 0.74 -1.1 139,301 + GFF1500 0.74 +0.6 139,302 - GFF1500 0.74 +0.3
Or see this region's nucleotide sequence