Strain Fitness in Xanthobacter sp. DMC5 around GFF1488

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1487 and GFF1488 are separated by 117 nucleotidesGFF1488 and GFF1489 are separated by 471 nucleotides GFF1487 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 125,355 to 126,707 GFF1487 GFF1488 - hypothetical protein, at 126,825 to 128,528 GFF1488 GFF1489 - hypothetical protein, at 129,000 to 129,644 GFF1489 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 125.935 kb on + strand, within GFF1487at 125.935 kb on + strand, within GFF1487at 125.935 kb on + strand, within GFF1487at 125.936 kb on - strand, within GFF1487at 126.090 kb on + strand, within GFF1487at 126.295 kb on + strand, within GFF1487at 126.298 kb on + strand, within GFF1487at 126.298 kb on + strand, within GFF1487at 126.299 kb on - strand, within GFF1487at 126.299 kb on - strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.487 kb on + strand, within GFF1487at 126.877 kb on + strandat 126.877 kb on + strandat 126.878 kb on - strandat 126.878 kb on - strandat 126.878 kb on - strandat 127.212 kb on + strand, within GFF1488at 127.215 kb on - strand, within GFF1488at 127.733 kb on - strand, within GFF1488at 127.822 kb on + strand, within GFF1488at 127.822 kb on + strand, within GFF1488at 127.822 kb on + strand, within GFF1488at 127.913 kb on + strand, within GFF1488at 127.913 kb on + strand, within GFF1488at 127.914 kb on - strand, within GFF1488at 127.914 kb on - strand, within GFF1488at 128.029 kb on + strand, within GFF1488at 128.029 kb on + strand, within GFF1488at 128.030 kb on - strand, within GFF1488at 128.087 kb on + strand, within GFF1488at 128.088 kb on - strand, within GFF1488at 128.088 kb on - strand, within GFF1488at 128.102 kb on + strand, within GFF1488at 128.102 kb on + strand, within GFF1488at 128.158 kb on - strand, within GFF1488at 128.301 kb on - strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.302 kb on + strand, within GFF1488at 128.303 kb on - strand, within GFF1488at 128.313 kb on - strand, within GFF1488at 128.347 kb on + strand, within GFF1488at 128.347 kb on + strand, within GFF1488at 128.348 kb on - strand, within GFF1488at 128.348 kb on - strand, within GFF1488at 128.371 kb on + strandat 128.371 kb on + strandat 128.608 kb on + strandat 128.608 kb on + strandat 128.608 kb on + strandat 128.631 kb on + strandat 128.675 kb on + strandat 128.675 kb on + strandat 128.675 kb on + strandat 128.676 kb on - strandat 128.735 kb on - strandat 128.931 kb on + strandat 128.932 kb on - strandat 128.932 kb on - strandat 128.962 kb on + strandat 128.962 kb on + strandat 128.962 kb on + strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 128.963 kb on - strandat 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.198 kb on + strand, within GFF1489at 129.199 kb on - strand, within GFF1489at 129.199 kb on - strand, within GFF1489at 129.388 kb on - strand, within GFF1489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
125,935 + GFF1487 0.43 +0.6
125,935 + GFF1487 0.43 +0.3
125,935 + GFF1487 0.43 -0.9
125,936 - GFF1487 0.43 +1.3
126,090 + GFF1487 0.54 -0.9
126,295 + GFF1487 0.69 -1.4
126,298 + GFF1487 0.70 -0.4
126,298 + GFF1487 0.70 +0.4
126,299 - GFF1487 0.70 -0.4
126,299 - GFF1487 0.70 -0.5
126,319 + GFF1487 0.71 -1.0
126,319 + GFF1487 0.71 -1.0
126,319 + GFF1487 0.71 +0.5
126,319 + GFF1487 0.71 +0.0
126,320 - GFF1487 0.71 +0.4
126,320 - GFF1487 0.71 -0.3
126,320 - GFF1487 0.71 -0.2
126,418 + GFF1487 0.79 -1.7
126,418 + GFF1487 0.79 -1.0
126,418 + GFF1487 0.79 -0.2
126,418 + GFF1487 0.79 +0.2
126,419 - GFF1487 0.79 -1.4
126,419 - GFF1487 0.79 -0.1
126,419 - GFF1487 0.79 -0.3
126,419 - GFF1487 0.79 -1.0
126,419 - GFF1487 0.79 +0.4
126,419 - GFF1487 0.79 +0.1
126,487 + GFF1487 0.84 -1.1
126,877 + +0.5
126,877 + +0.3
126,878 - +0.9
126,878 - -0.3
126,878 - -0.0
127,212 + GFF1488 0.23 +0.2
127,215 - GFF1488 0.23 +0.4
127,733 - GFF1488 0.53 +0.3
127,822 + GFF1488 0.59 -0.5
127,822 + GFF1488 0.59 -0.4
127,822 + GFF1488 0.59 +0.1
127,913 + GFF1488 0.64 +1.1
127,913 + GFF1488 0.64 -1.1
127,914 - GFF1488 0.64 -0.1
127,914 - GFF1488 0.64 +0.2
128,029 + GFF1488 0.71 -0.6
128,029 + GFF1488 0.71 +2.1
128,030 - GFF1488 0.71 -0.7
128,087 + GFF1488 0.74 -1.6
128,088 - GFF1488 0.74 -0.4
128,088 - GFF1488 0.74 +0.4
128,102 + GFF1488 0.75 -0.5
128,102 + GFF1488 0.75 -1.4
128,158 - GFF1488 0.78 +0.5
128,301 - GFF1488 0.87 -2.0
128,302 + GFF1488 0.87 +0.3
128,302 + GFF1488 0.87 +0.5
128,302 + GFF1488 0.87 +0.3
128,303 - GFF1488 0.87 -0.7
128,313 - GFF1488 0.87 +0.2
128,347 + GFF1488 0.89 -0.3
128,347 + GFF1488 0.89 -0.3
128,348 - GFF1488 0.89 -1.7
128,348 - GFF1488 0.89 -1.1
128,371 + -1.4
128,371 + +0.2
128,608 + -0.0
128,608 + -0.1
128,608 + -0.8
128,631 + -2.1
128,675 + +0.4
128,675 + -0.8
128,675 + +0.1
128,676 - -0.6
128,735 - +0.3
128,931 + -0.5
128,932 - -1.0
128,932 - +0.7
128,962 + -2.3
128,962 + +0.7
128,962 + -0.9
128,963 - +1.8
128,963 - +0.1
128,963 - +0.4
128,963 - +1.1
128,963 - +0.1
129,198 + GFF1489 0.31 +0.4
129,198 + GFF1489 0.31 +0.3
129,198 + GFF1489 0.31 +0.2
129,198 + GFF1489 0.31 -0.1
129,198 + GFF1489 0.31 -0.2
129,198 + GFF1489 0.31 +0.1
129,199 - GFF1489 0.31 -1.2
129,199 - GFF1489 0.31 -0.0
129,388 - GFF1489 0.60 +0.5

Or see this region's nucleotide sequence