Strain Fitness in Xanthobacter sp. DMC5 around GFF1454

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1453 and GFF1454 overlap by 4 nucleotidesGFF1454 and GFF1455 overlap by 4 nucleotides GFF1453 - Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 81,951 to 85,154 GFF1453 GFF1454 - Glucosamine kinase, at 85,151 to 88,432 GFF1454 GFF1455 - 1,4-alpha-glucan branching enzyme GlgB, at 88,429 to 90,648 GFF1455 Position (kb) 85 86 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 84.214 kb on - strand, within GFF1453at 84.214 kb on - strand, within GFF1453at 84.234 kb on + strand, within GFF1453at 84.444 kb on + strand, within GFF1453at 84.444 kb on + strand, within GFF1453at 84.478 kb on - strand, within GFF1453at 84.479 kb on + strand, within GFF1453at 84.479 kb on + strand, within GFF1453at 84.479 kb on + strand, within GFF1453at 84.685 kb on - strand, within GFF1453at 84.736 kb on - strand, within GFF1453at 84.792 kb on - strand, within GFF1453at 84.871 kb on - strandat 84.871 kb on - strandat 84.898 kb on - strandat 84.898 kb on - strandat 85.094 kb on - strandat 85.094 kb on - strandat 85.158 kb on + strandat 85.215 kb on - strandat 85.232 kb on + strandat 85.233 kb on - strandat 85.358 kb on + strandat 85.359 kb on - strandat 85.386 kb on - strandat 85.386 kb on - strandat 85.386 kb on - strandat 85.401 kb on - strandat 85.577 kb on + strand, within GFF1454at 85.577 kb on + strand, within GFF1454at 85.811 kb on + strand, within GFF1454at 85.812 kb on - strand, within GFF1454at 85.812 kb on - strand, within GFF1454at 85.933 kb on + strand, within GFF1454at 85.933 kb on + strand, within GFF1454at 85.934 kb on - strand, within GFF1454at 85.934 kb on - strand, within GFF1454at 85.934 kb on - strand, within GFF1454at 85.934 kb on - strand, within GFF1454at 85.934 kb on - strand, within GFF1454at 85.959 kb on - strand, within GFF1454at 86.018 kb on + strand, within GFF1454at 86.018 kb on + strand, within GFF1454at 86.018 kb on + strand, within GFF1454at 86.018 kb on + strand, within GFF1454at 86.166 kb on - strand, within GFF1454at 86.180 kb on + strand, within GFF1454at 86.241 kb on + strand, within GFF1454at 86.241 kb on + strand, within GFF1454at 86.242 kb on - strand, within GFF1454at 86.242 kb on - strand, within GFF1454at 86.313 kb on - strand, within GFF1454at 86.313 kb on - strand, within GFF1454at 86.315 kb on + strand, within GFF1454at 86.344 kb on + strand, within GFF1454at 86.344 kb on + strand, within GFF1454at 86.345 kb on - strand, within GFF1454at 86.345 kb on - strand, within GFF1454at 86.345 kb on - strand, within GFF1454at 86.465 kb on + strand, within GFF1454at 86.591 kb on - strand, within GFF1454at 86.621 kb on + strand, within GFF1454at 86.622 kb on - strand, within GFF1454at 86.622 kb on - strand, within GFF1454at 86.775 kb on - strand, within GFF1454at 86.796 kb on - strand, within GFF1454at 86.804 kb on + strand, within GFF1454at 86.805 kb on - strand, within GFF1454at 86.876 kb on + strand, within GFF1454at 86.963 kb on + strand, within GFF1454at 87.104 kb on + strand, within GFF1454at 87.105 kb on - strand, within GFF1454at 87.203 kb on + strand, within GFF1454at 87.204 kb on - strand, within GFF1454at 87.204 kb on - strand, within GFF1454at 87.204 kb on - strand, within GFF1454at 87.254 kb on - strand, within GFF1454at 87.395 kb on + strand, within GFF1454at 87.395 kb on + strand, within GFF1454at 87.572 kb on + strand, within GFF1454at 87.572 kb on + strand, within GFF1454at 87.572 kb on + strand, within GFF1454at 87.573 kb on - strand, within GFF1454at 87.680 kb on + strand, within GFF1454at 87.680 kb on + strand, within GFF1454at 87.681 kb on - strand, within GFF1454at 87.681 kb on - strand, within GFF1454at 88.130 kb on + strandat 88.131 kb on - strandat 88.131 kb on - strandat 88.239 kb on - strandat 88.328 kb on + strandat 88.328 kb on + strandat 88.329 kb on - strandat 88.340 kb on + strandat 88.567 kb on + strandat 88.568 kb on - strandat 88.744 kb on + strand, within GFF1455at 88.917 kb on - strand, within GFF1455at 89.012 kb on - strand, within GFF1455at 89.017 kb on + strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.288 kb on - strand, within GFF1455

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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84,214 - GFF1453 0.71 -0.0
84,214 - GFF1453 0.71 -0.5
84,234 + GFF1453 0.71 -0.9
84,444 + GFF1453 0.78 +1.1
84,444 + GFF1453 0.78 -0.1
84,478 - GFF1453 0.79 +0.6
84,479 + GFF1453 0.79 -0.0
84,479 + GFF1453 0.79 +0.1
84,479 + GFF1453 0.79 -1.6
84,685 - GFF1453 0.85 +0.4
84,736 - GFF1453 0.87 -1.8
84,792 - GFF1453 0.89 +0.1
84,871 - +0.5
84,871 - -0.6
84,898 - -0.7
84,898 - -1.9
85,094 - +1.7
85,094 - +2.3
85,158 + -0.0
85,215 - +0.2
85,232 + +0.3
85,233 - +0.3
85,358 + -0.6
85,359 - -0.5
85,386 - +0.7
85,386 - -0.4
85,386 - +0.4
85,401 - +0.6
85,577 + GFF1454 0.13 -0.1
85,577 + GFF1454 0.13 -0.4
85,811 + GFF1454 0.20 -1.1
85,812 - GFF1454 0.20 -0.2
85,812 - GFF1454 0.20 +0.9
85,933 + GFF1454 0.24 +1.3
85,933 + GFF1454 0.24 -1.0
85,934 - GFF1454 0.24 +0.5
85,934 - GFF1454 0.24 +0.2
85,934 - GFF1454 0.24 +0.4
85,934 - GFF1454 0.24 -0.1
85,934 - GFF1454 0.24 -0.1
85,959 - GFF1454 0.25 +2.6
86,018 + GFF1454 0.26 +0.1
86,018 + GFF1454 0.26 -0.6
86,018 + GFF1454 0.26 -0.0
86,018 + GFF1454 0.26 -1.8
86,166 - GFF1454 0.31 -0.9
86,180 + GFF1454 0.31 -0.9
86,241 + GFF1454 0.33 -1.5
86,241 + GFF1454 0.33 +0.3
86,242 - GFF1454 0.33 -0.5
86,242 - GFF1454 0.33 -0.2
86,313 - GFF1454 0.35 -0.1
86,313 - GFF1454 0.35 +0.5
86,315 + GFF1454 0.35 +0.9
86,344 + GFF1454 0.36 -1.0
86,344 + GFF1454 0.36 +0.7
86,345 - GFF1454 0.36 -0.6
86,345 - GFF1454 0.36 -0.3
86,345 - GFF1454 0.36 +1.0
86,465 + GFF1454 0.40 -0.1
86,591 - GFF1454 0.44 +0.5
86,621 + GFF1454 0.45 +0.0
86,622 - GFF1454 0.45 +1.2
86,622 - GFF1454 0.45 +0.1
86,775 - GFF1454 0.49 -1.4
86,796 - GFF1454 0.50 +1.1
86,804 + GFF1454 0.50 +0.2
86,805 - GFF1454 0.50 -0.3
86,876 + GFF1454 0.53 -2.7
86,963 + GFF1454 0.55 +0.1
87,104 + GFF1454 0.60 -0.8
87,105 - GFF1454 0.60 +0.5
87,203 + GFF1454 0.63 -0.3
87,204 - GFF1454 0.63 +0.1
87,204 - GFF1454 0.63 +1.3
87,204 - GFF1454 0.63 +0.1
87,254 - GFF1454 0.64 +0.2
87,395 + GFF1454 0.68 +0.4
87,395 + GFF1454 0.68 -1.9
87,572 + GFF1454 0.74 -1.0
87,572 + GFF1454 0.74 +0.4
87,572 + GFF1454 0.74 +0.8
87,573 - GFF1454 0.74 -1.2
87,680 + GFF1454 0.77 +0.2
87,680 + GFF1454 0.77 +0.8
87,681 - GFF1454 0.77 +0.4
87,681 - GFF1454 0.77 -1.2
88,130 + -0.7
88,131 - +0.7
88,131 - -1.2
88,239 - -0.7
88,328 + +0.0
88,328 + -0.4
88,329 - -0.9
88,340 + -0.4
88,567 + +0.9
88,568 - -0.3
88,744 + GFF1455 0.14 +0.3
88,917 - GFF1455 0.22 -0.4
89,012 - GFF1455 0.26 +0.3
89,017 + GFF1455 0.26 +0.1
89,018 - GFF1455 0.27 +0.4
89,018 - GFF1455 0.27 -0.0
89,018 - GFF1455 0.27 +0.5
89,018 - GFF1455 0.27 +0.2
89,201 - GFF1455 0.35 -0.6
89,201 - GFF1455 0.35 -1.3
89,201 - GFF1455 0.35 +0.9
89,288 - GFF1455 0.39 -0.9

Or see this region's nucleotide sequence