Strain Fitness in Xanthobacter sp. DMC5 around GFF1443

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1442 and GFF1443 are separated by 57 nucleotidesGFF1443 and GFF1444 overlap by 4 nucleotidesGFF1444 and GFF1445 are separated by 22 nucleotides GFF1442 - putative FAD-linked oxidoreductase, at 65,274 to 66,698 GFF1442 GFF1443 - Hydroxyquinol 1,2-dioxygenase, at 66,756 to 67,637 GFF1443 GFF1444 - 2-(hydroxymethyl)glutarate dehydrogenase, at 67,634 to 68,551 GFF1444 GFF1445 - Melamine deaminase, at 68,574 to 69,938 GFF1445 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.827 kb on + strand, within GFF1442at 65.827 kb on + strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.991 kb on + strand, within GFF1442at 65.991 kb on + strand, within GFF1442at 66.090 kb on + strand, within GFF1442at 66.113 kb on - strand, within GFF1442at 66.113 kb on - strand, within GFF1442at 66.113 kb on - strand, within GFF1442at 66.538 kb on + strand, within GFF1442at 66.571 kb on + strandat 66.571 kb on + strandat 66.572 kb on - strandat 66.572 kb on - strandat 66.572 kb on - strandat 66.572 kb on - strandat 66.686 kb on + strandat 66.687 kb on - strandat 66.687 kb on - strandat 66.687 kb on - strandat 66.806 kb on - strandat 66.925 kb on + strand, within GFF1443at 66.993 kb on + strand, within GFF1443at 66.993 kb on + strand, within GFF1443at 66.994 kb on - strand, within GFF1443at 66.994 kb on - strand, within GFF1443at 67.070 kb on - strand, within GFF1443at 67.168 kb on + strand, within GFF1443at 67.168 kb on + strand, within GFF1443at 67.169 kb on - strand, within GFF1443at 67.171 kb on + strand, within GFF1443at 67.171 kb on + strand, within GFF1443at 67.171 kb on + strand, within GFF1443at 67.172 kb on - strand, within GFF1443at 67.172 kb on - strand, within GFF1443at 67.286 kb on + strand, within GFF1443at 67.324 kb on + strand, within GFF1443at 67.325 kb on - strand, within GFF1443at 67.325 kb on - strand, within GFF1443at 67.756 kb on - strand, within GFF1444at 67.896 kb on + strand, within GFF1444at 67.896 kb on + strand, within GFF1444at 67.897 kb on - strand, within GFF1444at 67.897 kb on - strand, within GFF1444at 67.897 kb on - strand, within GFF1444at 68.043 kb on + strand, within GFF1444at 68.070 kb on + strand, within GFF1444at 68.070 kb on + strand, within GFF1444at 68.202 kb on + strand, within GFF1444at 68.542 kb on + strandat 68.543 kb on - strandat 68.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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65,827 + GFF1442 0.39 -2.0
65,827 + GFF1442 0.39 -0.0
65,828 - GFF1442 0.39 -0.3
65,828 - GFF1442 0.39 +0.2
65,828 - GFF1442 0.39 -0.1
65,828 - GFF1442 0.39 -0.8
65,828 - GFF1442 0.39 -1.0
65,828 - GFF1442 0.39 +0.3
65,828 - GFF1442 0.39 -0.7
65,828 - GFF1442 0.39 -0.3
65,991 + GFF1442 0.50 -0.2
65,991 + GFF1442 0.50 +0.7
66,090 + GFF1442 0.57 -0.4
66,113 - GFF1442 0.59 +0.4
66,113 - GFF1442 0.59 -2.7
66,113 - GFF1442 0.59 +0.5
66,538 + GFF1442 0.89 -0.3
66,571 + +0.4
66,571 + -1.3
66,572 - -0.2
66,572 - +0.1
66,572 - -0.6
66,572 - -2.1
66,686 + -0.1
66,687 - -0.4
66,687 - +1.3
66,687 - +0.1
66,806 - -0.0
66,925 + GFF1443 0.19 -0.8
66,993 + GFF1443 0.27 -0.3
66,993 + GFF1443 0.27 -1.3
66,994 - GFF1443 0.27 +2.1
66,994 - GFF1443 0.27 +0.1
67,070 - GFF1443 0.36 +0.6
67,168 + GFF1443 0.47 -1.1
67,168 + GFF1443 0.47 -0.8
67,169 - GFF1443 0.47 +0.5
67,171 + GFF1443 0.47 +0.4
67,171 + GFF1443 0.47 +0.6
67,171 + GFF1443 0.47 +0.3
67,172 - GFF1443 0.47 +0.3
67,172 - GFF1443 0.47 -0.6
67,286 + GFF1443 0.60 +0.7
67,324 + GFF1443 0.64 -0.4
67,325 - GFF1443 0.65 +0.4
67,325 - GFF1443 0.65 -2.8
67,756 - GFF1444 0.13 -0.7
67,896 + GFF1444 0.29 -0.6
67,896 + GFF1444 0.29 +0.1
67,897 - GFF1444 0.29 -1.1
67,897 - GFF1444 0.29 -1.2
67,897 - GFF1444 0.29 +1.6
68,043 + GFF1444 0.45 +0.6
68,070 + GFF1444 0.47 +1.1
68,070 + GFF1444 0.47 -0.6
68,202 + GFF1444 0.62 -0.3
68,542 + -1.1
68,543 - +1.3
68,543 - -1.0

Or see this region's nucleotide sequence