Strain Fitness in Xanthobacter sp. DMC5 around GFF1439

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1438 and GFF1439 are separated by 50 nucleotidesGFF1439 and GFF1440 overlap by 4 nucleotidesGFF1440 and GFF1441 overlap by 8 nucleotides GFF1438 - Ribose import binding protein RbsB, at 60,749 to 61,747 GFF1438 GFF1439 - Ribose import permease protein RbsC, at 61,798 to 62,772 GFF1439 GFF1440 - Ribose import permease protein RbsC, at 62,769 to 63,734 GFF1440 GFF1441 - Galactose/methyl galactoside import ATP-binding protein MglA, at 63,727 to 65,277 GFF1441 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.843 kb on + strandat 60.955 kb on + strand, within GFF1438at 60.956 kb on - strand, within GFF1438at 60.956 kb on - strand, within GFF1438at 60.956 kb on - strand, within GFF1438at 60.957 kb on + strand, within GFF1438at 60.957 kb on + strand, within GFF1438at 60.957 kb on + strand, within GFF1438at 60.958 kb on - strand, within GFF1438at 60.958 kb on - strand, within GFF1438at 61.167 kb on + strand, within GFF1438at 61.167 kb on + strand, within GFF1438at 61.168 kb on - strand, within GFF1438at 61.247 kb on - strand, within GFF1438at 61.318 kb on - strand, within GFF1438at 61.344 kb on + strand, within GFF1438at 61.344 kb on + strand, within GFF1438at 61.345 kb on - strand, within GFF1438at 61.345 kb on - strand, within GFF1438at 61.346 kb on - strand, within GFF1438at 61.458 kb on + strand, within GFF1438at 61.458 kb on + strand, within GFF1438at 61.458 kb on + strand, within GFF1438at 61.557 kb on + strand, within GFF1438at 61.557 kb on + strand, within GFF1438at 61.557 kb on + strand, within GFF1438at 61.558 kb on - strand, within GFF1438at 61.558 kb on - strand, within GFF1438at 61.558 kb on - strand, within GFF1438at 61.623 kb on + strand, within GFF1438at 61.624 kb on - strand, within GFF1438at 61.771 kb on - strandat 61.771 kb on - strandat 62.102 kb on + strand, within GFF1439at 62.102 kb on + strand, within GFF1439at 62.102 kb on + strand, within GFF1439at 62.103 kb on - strand, within GFF1439at 62.103 kb on - strand, within GFF1439at 62.103 kb on - strand, within GFF1439at 62.103 kb on - strand, within GFF1439at 62.174 kb on + strand, within GFF1439at 62.174 kb on + strand, within GFF1439at 62.175 kb on - strand, within GFF1439at 62.175 kb on - strand, within GFF1439at 62.175 kb on - strand, within GFF1439at 62.175 kb on - strand, within GFF1439at 62.271 kb on - strand, within GFF1439at 62.330 kb on + strand, within GFF1439at 62.330 kb on + strand, within GFF1439at 62.330 kb on + strand, within GFF1439at 62.330 kb on + strand, within GFF1439at 62.331 kb on - strand, within GFF1439at 62.331 kb on - strand, within GFF1439at 62.333 kb on + strand, within GFF1439at 62.333 kb on + strand, within GFF1439at 62.334 kb on - strand, within GFF1439at 62.334 kb on - strand, within GFF1439at 62.336 kb on + strand, within GFF1439at 62.336 kb on + strand, within GFF1439at 62.336 kb on + strand, within GFF1439at 62.336 kb on + strand, within GFF1439at 62.337 kb on - strand, within GFF1439at 62.337 kb on - strand, within GFF1439at 62.369 kb on + strand, within GFF1439at 62.369 kb on + strand, within GFF1439at 62.369 kb on + strand, within GFF1439at 62.369 kb on + strand, within GFF1439at 62.370 kb on - strand, within GFF1439at 62.370 kb on - strand, within GFF1439at 62.370 kb on - strand, within GFF1439at 62.370 kb on - strand, within GFF1439at 62.523 kb on + strand, within GFF1439at 62.700 kb on - strandat 62.700 kb on - strandat 62.700 kb on - strandat 63.073 kb on + strand, within GFF1440at 63.073 kb on + strand, within GFF1440at 63.073 kb on + strand, within GFF1440at 63.074 kb on - strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.152 kb on - strand, within GFF1440at 63.152 kb on - strand, within GFF1440at 63.172 kb on + strand, within GFF1440at 63.173 kb on - strand, within GFF1440at 63.196 kb on + strand, within GFF1440at 63.196 kb on + strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.251 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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60,843 + -0.3
60,955 + GFF1438 0.21 +1.0
60,956 - GFF1438 0.21 -0.0
60,956 - GFF1438 0.21 -1.2
60,956 - GFF1438 0.21 +0.1
60,957 + GFF1438 0.21 -0.3
60,957 + GFF1438 0.21 -0.1
60,957 + GFF1438 0.21 -0.0
60,958 - GFF1438 0.21 -1.5
60,958 - GFF1438 0.21 +0.3
61,167 + GFF1438 0.42 -0.0
61,167 + GFF1438 0.42 -0.7
61,168 - GFF1438 0.42 -0.5
61,247 - GFF1438 0.50 +0.1
61,318 - GFF1438 0.57 -1.2
61,344 + GFF1438 0.60 +1.2
61,344 + GFF1438 0.60 -0.2
61,345 - GFF1438 0.60 +1.6
61,345 - GFF1438 0.60 -0.9
61,346 - GFF1438 0.60 -0.4
61,458 + GFF1438 0.71 +0.7
61,458 + GFF1438 0.71 +1.1
61,458 + GFF1438 0.71 -0.8
61,557 + GFF1438 0.81 +0.8
61,557 + GFF1438 0.81 +0.2
61,557 + GFF1438 0.81 -0.1
61,558 - GFF1438 0.81 +1.1
61,558 - GFF1438 0.81 -0.8
61,558 - GFF1438 0.81 +0.8
61,623 + GFF1438 0.87 -0.3
61,624 - GFF1438 0.88 -0.4
61,771 - +0.3
61,771 - -0.5
62,102 + GFF1439 0.31 -0.9
62,102 + GFF1439 0.31 -2.1
62,102 + GFF1439 0.31 +1.3
62,103 - GFF1439 0.31 -0.7
62,103 - GFF1439 0.31 +0.0
62,103 - GFF1439 0.31 +0.2
62,103 - GFF1439 0.31 +1.3
62,174 + GFF1439 0.39 -0.2
62,174 + GFF1439 0.39 +0.3
62,175 - GFF1439 0.39 -0.6
62,175 - GFF1439 0.39 -0.2
62,175 - GFF1439 0.39 +0.7
62,175 - GFF1439 0.39 +1.6
62,271 - GFF1439 0.49 -0.0
62,330 + GFF1439 0.55 +0.8
62,330 + GFF1439 0.55 -0.9
62,330 + GFF1439 0.55 +0.2
62,330 + GFF1439 0.55 -0.4
62,331 - GFF1439 0.55 +0.1
62,331 - GFF1439 0.55 +0.6
62,333 + GFF1439 0.55 +0.7
62,333 + GFF1439 0.55 -1.4
62,334 - GFF1439 0.55 +1.0
62,334 - GFF1439 0.55 -0.6
62,336 + GFF1439 0.55 +0.4
62,336 + GFF1439 0.55 +1.5
62,336 + GFF1439 0.55 -0.5
62,336 + GFF1439 0.55 -0.5
62,337 - GFF1439 0.55 +0.5
62,337 - GFF1439 0.55 -0.3
62,369 + GFF1439 0.59 +0.7
62,369 + GFF1439 0.59 -1.1
62,369 + GFF1439 0.59 +1.3
62,369 + GFF1439 0.59 -0.4
62,370 - GFF1439 0.59 +0.4
62,370 - GFF1439 0.59 -1.1
62,370 - GFF1439 0.59 +1.3
62,370 - GFF1439 0.59 +0.2
62,523 + GFF1439 0.74 +1.1
62,700 - -1.2
62,700 - -0.5
62,700 - -0.3
63,073 + GFF1440 0.31 +0.4
63,073 + GFF1440 0.31 +0.3
63,073 + GFF1440 0.31 +0.7
63,074 - GFF1440 0.32 +0.2
63,151 + GFF1440 0.40 -0.0
63,151 + GFF1440 0.40 +1.2
63,151 + GFF1440 0.40 +0.1
63,151 + GFF1440 0.40 -0.4
63,151 + GFF1440 0.40 +0.7
63,152 - GFF1440 0.40 -2.1
63,152 - GFF1440 0.40 -1.3
63,172 + GFF1440 0.42 +0.0
63,173 - GFF1440 0.42 +0.1
63,196 + GFF1440 0.44 +0.7
63,196 + GFF1440 0.44 +1.3
63,197 - GFF1440 0.44 -0.3
63,197 - GFF1440 0.44 -0.9
63,197 - GFF1440 0.44 +0.7
63,197 - GFF1440 0.44 +0.1
63,251 - GFF1440 0.50 +0.7
63,556 - GFF1440 0.81 +0.0
63,556 - GFF1440 0.81 +0.5
63,556 - GFF1440 0.81 -1.2
63,556 - GFF1440 0.81 -1.9

Or see this region's nucleotide sequence