Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1431 and GFF1432 are separated by 79 nucleotides GFF1432 and GFF1433 are separated by 132 nucleotides GFF1433 and GFF1434 overlap by 4 nucleotides GFF1434 and GFF1435 are separated by 9 nucleotides
GFF1431 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 55,189 to 56,085
GFF1431
GFF1432 - Pca regulon regulatory protein, at 56,165 to 56,929
GFF1432
GFF1433 - 3-oxoadipate CoA-transferase subunit A, at 57,062 to 57,784
GFF1433
GFF1434 - 3-oxoadipate CoA-transferase subunit B, at 57,781 to 58,464
GFF1434
GFF1435 - Beta-ketoadipyl-CoA thiolase, at 58,474 to 59,676
GFF1435
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1
2 at 56.073 kb on + strand at 56.074 kb on - strand at 56.074 kb on - strand at 56.074 kb on - strand at 56.111 kb on + strand at 56.166 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.217 kb on + strand at 56.218 kb on - strand at 56.514 kb on + strand, within GFF1432 at 56.514 kb on + strand, within GFF1432 at 56.583 kb on + strand, within GFF1432 at 56.583 kb on + strand, within GFF1432 at 56.584 kb on - strand, within GFF1432 at 56.748 kb on + strand, within GFF1432 at 56.749 kb on - strand, within GFF1432 at 56.757 kb on + strand, within GFF1432 at 56.816 kb on - strand, within GFF1432 at 57.345 kb on - strand, within GFF1433 at 57.345 kb on - strand, within GFF1433 at 57.434 kb on + strand, within GFF1433 at 57.434 kb on + strand, within GFF1433 at 57.435 kb on - strand, within GFF1433 at 57.449 kb on + strand, within GFF1433 at 57.503 kb on + strand, within GFF1433 at 57.503 kb on + strand, within GFF1433 at 57.504 kb on - strand, within GFF1433 at 57.504 kb on - strand, within GFF1433 at 57.581 kb on + strand, within GFF1433 at 57.581 kb on + strand, within GFF1433 at 57.776 kb on + strand at 57.776 kb on + strand at 57.776 kb on + strand at 57.777 kb on - strand at 57.777 kb on - strand at 57.798 kb on + strand at 57.859 kb on + strand, within GFF1434 at 57.859 kb on + strand, within GFF1434 at 57.859 kb on + strand, within GFF1434 at 57.859 kb on + strand, within GFF1434 at 57.860 kb on - strand, within GFF1434 at 57.928 kb on + strand, within GFF1434 at 57.928 kb on + strand, within GFF1434 at 57.929 kb on - strand, within GFF1434 at 57.929 kb on - strand, within GFF1434 at 58.111 kb on + strand, within GFF1434 at 58.111 kb on + strand, within GFF1434 at 58.111 kb on + strand, within GFF1434 at 58.111 kb on + strand, within GFF1434 at 58.312 kb on + strand, within GFF1434 at 58.312 kb on + strand, within GFF1434 at 58.314 kb on + strand, within GFF1434 at 58.314 kb on + strand, within GFF1434 at 58.315 kb on - strand, within GFF1434 at 58.315 kb on - strand, within GFF1434 at 58.462 kb on + strand at 58.462 kb on + strand at 58.463 kb on - strand at 58.498 kb on + strand at 58.498 kb on + strand at 58.498 kb on + strand at 58.499 kb on - strand at 58.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 56,073 + +1.1 56,074 - +0.6 56,074 - -1.3 56,074 - -1.2 56,111 + -0.6 56,166 + +0.6 56,217 + +1.3 56,217 + -1.4 56,217 + -0.7 56,217 + -1.0 56,218 - +0.3 56,514 + GFF1432 0.46 -0.9 56,514 + GFF1432 0.46 -0.1 56,583 + GFF1432 0.55 +0.5 56,583 + GFF1432 0.55 +0.2 56,584 - GFF1432 0.55 +0.7 56,748 + GFF1432 0.76 -0.3 56,749 - GFF1432 0.76 -0.9 56,757 + GFF1432 0.77 -0.8 56,816 - GFF1432 0.85 +1.3 57,345 - GFF1433 0.39 -0.3 57,345 - GFF1433 0.39 -1.4 57,434 + GFF1433 0.51 +1.0 57,434 + GFF1433 0.51 +0.2 57,435 - GFF1433 0.52 +0.1 57,449 + GFF1433 0.54 -0.7 57,503 + GFF1433 0.61 +1.5 57,503 + GFF1433 0.61 -0.1 57,504 - GFF1433 0.61 +1.2 57,504 - GFF1433 0.61 +1.0 57,581 + GFF1433 0.72 +1.3 57,581 + GFF1433 0.72 -1.2 57,776 + +0.5 57,776 + -0.7 57,776 + -0.3 57,777 - -1.1 57,777 - +0.1 57,798 + +0.7 57,859 + GFF1434 0.11 -0.4 57,859 + GFF1434 0.11 -0.2 57,859 + GFF1434 0.11 -1.2 57,859 + GFF1434 0.11 +0.3 57,860 - GFF1434 0.12 +0.6 57,928 + GFF1434 0.21 +0.1 57,928 + GFF1434 0.21 +0.6 57,929 - GFF1434 0.22 +0.6 57,929 - GFF1434 0.22 +0.2 58,111 + GFF1434 0.48 +0.6 58,111 + GFF1434 0.48 -0.3 58,111 + GFF1434 0.48 +0.7 58,111 + GFF1434 0.48 -0.1 58,312 + GFF1434 0.78 +0.5 58,312 + GFF1434 0.78 -0.6 58,314 + GFF1434 0.78 -0.3 58,314 + GFF1434 0.78 -0.7 58,315 - GFF1434 0.78 +0.6 58,315 - GFF1434 0.78 +0.7 58,462 + -0.8 58,462 + +0.3 58,463 - +0.2 58,498 + -0.9 58,498 + -1.3 58,498 + +1.8 58,499 - -0.0 58,499 - -0.0
Or see this region's nucleotide sequence