Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1404 and GFF1405 overlap by 4 nucleotides GFF1405 and GFF1406 overlap by 11 nucleotides GFF1406 and GFF1407 are separated by 278 nucleotides
GFF1404 - hypothetical protein, at 23,802 to 24,311
GFF1404
GFF1405 - hypothetical protein, at 24,308 to 24,778
GFF1405
GFF1406 - RNA polymerase sigma-H factor, at 24,768 to 25,328
GFF1406
GFF1407 - Multidrug resistance protein MdtA, at 25,607 to 26,773
GFF1407
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 24.176 kb on + strand, within GFF1404 at 24.176 kb on + strand, within GFF1404 at 24.176 kb on + strand, within GFF1404 at 24.177 kb on - strand, within GFF1404 at 24.177 kb on - strand, within GFF1404 at 24.177 kb on - strand, within GFF1404 at 24.311 kb on + strand at 24.311 kb on + strand at 24.312 kb on - strand at 24.312 kb on - strand at 24.312 kb on - strand at 24.461 kb on - strand, within GFF1405 at 24.914 kb on - strand, within GFF1406 at 25.105 kb on + strand, within GFF1406 at 25.247 kb on - strand, within GFF1406 at 25.851 kb on + strand, within GFF1407 at 25.852 kb on - strand, within GFF1407 at 25.852 kb on - strand, within GFF1407 at 25.991 kb on + strand, within GFF1407 at 26.000 kb on + strand, within GFF1407 at 26.000 kb on + strand, within GFF1407 at 26.000 kb on + strand, within GFF1407 at 26.000 kb on + strand, within GFF1407 at 26.001 kb on - strand, within GFF1407 at 26.072 kb on + strand, within GFF1407 at 26.073 kb on - strand, within GFF1407 at 26.073 kb on - strand, within GFF1407 at 26.132 kb on + strand, within GFF1407 at 26.132 kb on + strand, within GFF1407 at 26.132 kb on + strand, within GFF1407 at 26.133 kb on - strand, within GFF1407
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 24,176 + GFF1404 0.73 -0.0 24,176 + GFF1404 0.73 +1.3 24,176 + GFF1404 0.73 +0.1 24,177 - GFF1404 0.74 -1.3 24,177 - GFF1404 0.74 -0.5 24,177 - GFF1404 0.74 -1.8 24,311 + +0.0 24,311 + -0.6 24,312 - -0.6 24,312 - +0.1 24,312 - -1.0 24,461 - GFF1405 0.32 +1.0 24,914 - GFF1406 0.26 -0.4 25,105 + GFF1406 0.60 -1.6 25,247 - GFF1406 0.85 +0.3 25,851 + GFF1407 0.21 -1.0 25,852 - GFF1407 0.21 -1.1 25,852 - GFF1407 0.21 +0.2 25,991 + GFF1407 0.33 -0.7 26,000 + GFF1407 0.34 -0.1 26,000 + GFF1407 0.34 -2.3 26,000 + GFF1407 0.34 +0.5 26,000 + GFF1407 0.34 +0.2 26,001 - GFF1407 0.34 -0.3 26,072 + GFF1407 0.40 +0.5 26,073 - GFF1407 0.40 -0.1 26,073 - GFF1407 0.40 -0.2 26,132 + GFF1407 0.45 +0.2 26,132 + GFF1407 0.45 +1.1 26,132 + GFF1407 0.45 +0.3 26,133 - GFF1407 0.45 +0.6
Or see this region's nucleotide sequence