Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1397 and GFF1398 overlap by 14 nucleotides GFF1398 and GFF1399 are separated by 75 nucleotides GFF1399 and GFF1400 overlap by 4 nucleotides
GFF1397 - Lipopolysaccharide export system ATP-binding protein LptB, at 16,213 to 17,013
GFF1397
GFF1398 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 17,000 to 17,701
GFF1398
GFF1399 - putative ABC transporter ATP-binding/permease protein, at 17,777 to 19,585
GFF1399
GFF1400 - ATP-binding/permease protein CydD, at 19,582 to 21,411
GFF1400
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -1
0
1 at 16.967 kb on - strand at 17.030 kb on + strand at 17.030 kb on + strand at 17.031 kb on - strand at 17.031 kb on - strand at 17.349 kb on - strand, within GFF1398 at 17.349 kb on - strand, within GFF1398 at 17.610 kb on - strand, within GFF1398 at 17.610 kb on - strand, within GFF1398 at 17.687 kb on + strand at 17.687 kb on + strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.705 kb on + strand at 17.705 kb on + strand at 17.706 kb on - strand at 18.135 kb on - strand, within GFF1399 at 18.135 kb on - strand, within GFF1399 at 18.187 kb on + strand, within GFF1399 at 18.332 kb on + strand, within GFF1399 at 18.332 kb on + strand, within GFF1399 at 18.546 kb on + strand, within GFF1399 at 18.547 kb on - strand, within GFF1399 at 18.942 kb on + strand, within GFF1399 at 18.943 kb on - strand, within GFF1399 at 19.132 kb on + strand, within GFF1399 at 19.132 kb on + strand, within GFF1399 at 19.133 kb on - strand, within GFF1399 at 19.658 kb on - strand at 20.090 kb on + strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.260 kb on - strand, within GFF1400 at 20.260 kb on - strand, within GFF1400 at 20.441 kb on + strand, within GFF1400 at 20.442 kb on - strand, within GFF1400 at 20.471 kb on + strand, within GFF1400 at 20.471 kb on + strand, within GFF1400 at 20.471 kb on + strand, within GFF1400
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 16,967 - -0.8 17,030 + -0.4 17,030 + -0.0 17,031 - +0.1 17,031 - -0.6 17,349 - GFF1398 0.50 -0.5 17,349 - GFF1398 0.50 +1.0 17,610 - GFF1398 0.87 +0.2 17,610 - GFF1398 0.87 +0.9 17,687 + +1.0 17,687 + +0.6 17,700 - -0.7 17,700 - +1.7 17,705 + +0.6 17,705 + -0.2 17,706 - +0.1 18,135 - GFF1399 0.20 -0.7 18,135 - GFF1399 0.20 -0.3 18,187 + GFF1399 0.23 -0.9 18,332 + GFF1399 0.31 +0.1 18,332 + GFF1399 0.31 -0.8 18,546 + GFF1399 0.43 +0.2 18,547 - GFF1399 0.43 -0.1 18,942 + GFF1399 0.64 +0.2 18,943 - GFF1399 0.64 -0.1 19,132 + GFF1399 0.75 -0.1 19,132 + GFF1399 0.75 -1.3 19,133 - GFF1399 0.75 +0.1 19,658 - +1.0 20,090 + GFF1400 0.28 +1.1 20,091 - GFF1400 0.28 +0.1 20,091 - GFF1400 0.28 -0.5 20,091 - GFF1400 0.28 +0.3 20,091 - GFF1400 0.28 +1.3 20,091 - GFF1400 0.28 -0.4 20,091 - GFF1400 0.28 -0.1 20,091 - GFF1400 0.28 -0.6 20,260 - GFF1400 0.37 +0.3 20,260 - GFF1400 0.37 +1.1 20,441 + GFF1400 0.47 +0.4 20,442 - GFF1400 0.47 +0.9 20,471 + GFF1400 0.49 -0.2 20,471 + GFF1400 0.49 -0.4 20,471 + GFF1400 0.49 +0.4
Or see this region's nucleotide sequence