Strain Fitness in Xanthobacter sp. DMC5 around GFF1360

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1359 and GFF1360 are separated by 504 nucleotidesGFF1360 and GFF1361 are separated by 10 nucleotidesGFF1361 and GFF1362 are separated by 24 nucleotidesGFF1362 and GFF1363 are separated by 17 nucleotides GFF1359 - Protein translocase subunit SecY, at 1,471,996 to 1,473,330 GFF1359 GFF1360 - 50S ribosomal protein L15, at 1,473,835 to 1,474,311 GFF1360 GFF1361 - 50S ribosomal protein L30, at 1,474,322 to 1,474,504 GFF1361 GFF1362 - 30S ribosomal protein S5, at 1,474,529 to 1,475,086 GFF1362 GFF1363 - 50S ribosomal protein L18, at 1,475,104 to 1,475,466 GFF1363 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -1 0 1at 1473.370 kb on - strandat 1473.372 kb on - strandat 1473.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,473,370 - +0.9
1,473,372 - +0.2
1,473,372 - +0.6

Or see this region's nucleotide sequence