Strain Fitness in Xanthobacter sp. DMC5 around GFF1356

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1354 and GFF1355 are separated by 133 nucleotidesGFF1355 and GFF1356 are separated by 121 nucleotidesGFF1356 and GFF1357 are separated by 205 nucleotides GFF1354 - DNA-directed RNA polymerase subunit alpha, at 1,468,310 to 1,469,335 GFF1354 GFF1355 - 30S ribosomal protein S11, at 1,469,469 to 1,469,858 GFF1355 GFF1356 - 30S ribosomal protein S13, at 1,469,980 to 1,470,360 GFF1356 GFF1357 - hypothetical protein, at 1,470,566 to 1,470,832 GFF1357 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -1 0 1at 1470.530 kb on - strandat 1470.586 kb on - strandat 1470.867 kb on + strandat 1470.868 kb on - strandat 1471.022 kb on + strandat 1471.023 kb on - strandat 1471.054 kb on + strandat 1471.054 kb on + strandat 1471.055 kb on - strandat 1471.055 kb on - strandat 1471.055 kb on - strandat 1471.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,470,530 - -0.8
1,470,586 - -0.7
1,470,867 + +1.1
1,470,868 - -0.5
1,471,022 + +0.4
1,471,023 - -1.1
1,471,054 + +0.6
1,471,054 + -1.3
1,471,055 - -1.5
1,471,055 - -0.5
1,471,055 - -0.2
1,471,245 - -0.6

Or see this region's nucleotide sequence