Strain Fitness in Xanthobacter sp. DMC5 around GFF134

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF133 and GFF134 are separated by 138 nucleotidesGFF134 and GFF135 are separated by 105 nucleotidesGFF135 and GFF136 are separated by 107 nucleotides GFF133 - Anhydromuropeptide permease, at 144,731 to 146,089 GFF133 GFF134 - Transcriptional regulatory protein DegU, at 146,228 to 146,902 GFF134 GFF135 - hypothetical protein, at 147,008 to 147,481 GFF135 GFF136 - Acetyl esterase, at 147,589 to 148,545 GFF136 Position (kb) 146 147Strain fitness (log2 ratio) -1 0 1at 146.173 kb on + strandat 146.173 kb on + strandat 146.174 kb on - strandat 146.677 kb on - strand, within GFF134at 147.087 kb on + strand, within GFF135at 147.523 kb on + strandat 147.563 kb on + strandat 147.863 kb on - strand, within GFF136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
146,173 + -0.8
146,173 + -0.8
146,174 - -1.6
146,677 - GFF134 0.67 +1.0
147,087 + GFF135 0.17 -0.3
147,523 + -0.3
147,563 + +1.5
147,863 - GFF136 0.29 -1.4

Or see this region's nucleotide sequence