Strain Fitness in Xanthobacter sp. DMC5 around GFF1323

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1322 and GFF1323 are separated by 36 nucleotidesGFF1323 and GFF1324 are separated by 37 nucleotides GFF1322 - Glutamate-pyruvate aminotransferase AlaC, at 1,435,272 to 1,436,492 GFF1322 GFF1323 - Homoserine dehydrogenase, at 1,436,529 to 1,437,824 GFF1323 GFF1324 - Fructose-1,6-bisphosphatase class 2, at 1,437,862 to 1,438,893 GFF1324 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -1 0 1at 1436.535 kb on + strandat 1438.285 kb on + strand, within GFF1324at 1438.285 kb on + strand, within GFF1324at 1438.286 kb on - strand, within GFF1324at 1438.286 kb on - strand, within GFF1324at 1438.286 kb on - strand, within GFF1324at 1438.286 kb on - strand, within GFF1324at 1438.286 kb on - strand, within GFF1324at 1438.550 kb on - strand, within GFF1324at 1438.700 kb on - strand, within GFF1324

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,436,535 + +0.2
1,438,285 + GFF1324 0.41 +1.5
1,438,285 + GFF1324 0.41 +0.2
1,438,286 - GFF1324 0.41 +1.3
1,438,286 - GFF1324 0.41 -1.1
1,438,286 - GFF1324 0.41 +0.1
1,438,286 - GFF1324 0.41 -0.6
1,438,286 - GFF1324 0.41 +0.3
1,438,550 - GFF1324 0.67 -1.5
1,438,700 - GFF1324 0.81 -0.2

Or see this region's nucleotide sequence