Strain Fitness in Xanthobacter sp. DMC5 around GFF1322

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1320 and GFF1321 are separated by 250 nucleotidesGFF1321 and GFF1322 are separated by 161 nucleotidesGFF1322 and GFF1323 are separated by 36 nucleotides GFF1320 - hypothetical protein, at 1,432,566 to 1,434,569 GFF1320 GFF1321 - hypothetical protein, at 1,434,820 to 1,435,110 GFF1321 GFF1322 - Glutamate-pyruvate aminotransferase AlaC, at 1,435,272 to 1,436,492 GFF1322 GFF1323 - Homoserine dehydrogenase, at 1,436,529 to 1,437,824 GFF1323 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -2 -1 0 1at 1434.650 kb on + strandat 1434.655 kb on + strandat 1434.655 kb on + strandat 1435.157 kb on - strandat 1435.216 kb on + strandat 1435.216 kb on + strandat 1436.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,434,650 + +1.3
1,434,655 + +0.6
1,434,655 + -1.3
1,435,157 - -2.0
1,435,216 + +0.2
1,435,216 + +0.2
1,436,535 + +0.2

Or see this region's nucleotide sequence