Strain Fitness in Xanthobacter sp. DMC5 around GFF131

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF129 and GFF130 overlap by 14 nucleotidesGFF130 and GFF131 are separated by 4 nucleotidesGFF131 and GFF132 are separated by 332 nucleotidesGFF132 and GFF133 are separated by 10 nucleotides GFF129 - Leucine--tRNA ligase, at 139,650 to 142,334 GFF129 GFF130 - hypothetical protein, at 142,321 to 142,905 GFF130 GFF131 - hypothetical protein, at 142,910 to 143,935 GFF131 GFF132 - hypothetical protein, at 144,268 to 144,720 GFF132 GFF133 - Anhydromuropeptide permease, at 144,731 to 146,089 GFF133 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1at 144.034 kb on + strandat 144.035 kb on - strandat 144.206 kb on - strandat 144.417 kb on + strand, within GFF132at 144.418 kb on - strand, within GFF132at 144.515 kb on - strand, within GFF132at 144.515 kb on - strand, within GFF132at 144.580 kb on + strand, within GFF132at 144.581 kb on - strand, within GFF132at 144.593 kb on - strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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144,034 + -2.3
144,035 - -0.1
144,206 - +0.2
144,417 + GFF132 0.33 -0.6
144,418 - GFF132 0.33 -0.6
144,515 - GFF132 0.55 -1.0
144,515 - GFF132 0.55 -0.5
144,580 + GFF132 0.69 -0.2
144,581 - GFF132 0.69 -0.3
144,593 - GFF132 0.72 -0.5

Or see this region's nucleotide sequence