Strain Fitness in Xanthobacter sp. DMC5 around GFF129

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF128 and GFF129 are separated by 474 nucleotidesGFF129 and GFF130 overlap by 14 nucleotidesGFF130 and GFF131 are separated by 4 nucleotides GFF128 - hypothetical protein, at 137,721 to 139,175 GFF128 GFF129 - Leucine--tRNA ligase, at 139,650 to 142,334 GFF129 GFF130 - hypothetical protein, at 142,321 to 142,905 GFF130 GFF131 - hypothetical protein, at 142,910 to 143,935 GFF131 Position (kb) 139 140 141 142 143Strain fitness (log2 ratio) -1 0 1at 138.853 kb on + strand, within GFF128at 138.904 kb on + strand, within GFF128

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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138,853 + GFF128 0.78 +0.6
138,904 + GFF128 0.81 -0.5

Or see this region's nucleotide sequence