Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1245 and GFF1246 are separated by 5 nucleotides GFF1246 and GFF1247 are separated by 71 nucleotides GFF1247 and GFF1248 are separated by 283 nucleotides GFF1248 and GFF1249 are separated by 15 nucleotides
GFF1245 - NADH-quinone oxidoreductase chain 1, at 1,351,013 to 1,352,317
GFF1245
GFF1246 - hypothetical protein, at 1,352,323 to 1,353,195
GFF1246
GFF1247 - NADH-quinone oxidoreductase subunit D, at 1,353,267 to 1,354,472
GFF1247
GFF1248 - NADH-quinone oxidoreductase chain 5, at 1,354,756 to 1,355,385
GFF1248
GFF1249 - NADH-quinone oxidoreductase subunit B, at 1,355,401 to 1,355,985
GFF1249
Position (kb)
1353
1354
1355 Strain fitness (log2 ratio)
-1
0
1
2 at 1352.595 kb on - strand, within GFF1246 at 1352.595 kb on - strand, within GFF1246 at 1354.459 kb on - strand at 1354.493 kb on - strand at 1354.518 kb on - strand at 1354.518 kb on - strand at 1354.573 kb on - strand at 1354.697 kb on - strand at 1354.745 kb on - strand at 1354.745 kb on - strand at 1354.745 kb on - strand at 1354.745 kb on - strand at 1354.818 kb on - strand at 1354.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 1,352,595 - GFF1246 0.31 +2.1 1,352,595 - GFF1246 0.31 +1.4 1,354,459 - -1.4 1,354,493 - -0.4 1,354,518 - -0.6 1,354,518 - +0.5 1,354,573 - +0.4 1,354,697 - +0.5 1,354,745 - +0.5 1,354,745 - -0.4 1,354,745 - +0.2 1,354,745 - +0.1 1,354,818 - -0.2 1,354,818 - -0.2
Or see this region's nucleotide sequence