Strain Fitness in Xanthobacter sp. DMC5 around GFF1247

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1245 and GFF1246 are separated by 5 nucleotidesGFF1246 and GFF1247 are separated by 71 nucleotidesGFF1247 and GFF1248 are separated by 283 nucleotidesGFF1248 and GFF1249 are separated by 15 nucleotides GFF1245 - NADH-quinone oxidoreductase chain 1, at 1,351,013 to 1,352,317 GFF1245 GFF1246 - hypothetical protein, at 1,352,323 to 1,353,195 GFF1246 GFF1247 - NADH-quinone oxidoreductase subunit D, at 1,353,267 to 1,354,472 GFF1247 GFF1248 - NADH-quinone oxidoreductase chain 5, at 1,354,756 to 1,355,385 GFF1248 GFF1249 - NADH-quinone oxidoreductase subunit B, at 1,355,401 to 1,355,985 GFF1249 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -1 0 1 2at 1352.595 kb on - strand, within GFF1246at 1352.595 kb on - strand, within GFF1246at 1354.459 kb on - strandat 1354.493 kb on - strandat 1354.518 kb on - strandat 1354.518 kb on - strandat 1354.573 kb on - strandat 1354.697 kb on - strandat 1354.745 kb on - strandat 1354.745 kb on - strandat 1354.745 kb on - strandat 1354.745 kb on - strandat 1354.818 kb on - strandat 1354.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,352,595 - GFF1246 0.31 +2.1
1,352,595 - GFF1246 0.31 +1.4
1,354,459 - -1.4
1,354,493 - -0.4
1,354,518 - -0.6
1,354,518 - +0.5
1,354,573 - +0.4
1,354,697 - +0.5
1,354,745 - +0.5
1,354,745 - -0.4
1,354,745 - +0.2
1,354,745 - +0.1
1,354,818 - -0.2
1,354,818 - -0.2

Or see this region's nucleotide sequence