Strain Fitness in Xanthobacter sp. DMC5 around GFF1246

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1245 and GFF1246 are separated by 5 nucleotidesGFF1246 and GFF1247 are separated by 71 nucleotides GFF1245 - NADH-quinone oxidoreductase chain 1, at 1,351,013 to 1,352,317 GFF1245 GFF1246 - hypothetical protein, at 1,352,323 to 1,353,195 GFF1246 GFF1247 - NADH-quinone oxidoreductase subunit D, at 1,353,267 to 1,354,472 GFF1247 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -1 0 1 2at 1352.595 kb on - strand, within GFF1246at 1352.595 kb on - strand, within GFF1246

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
1,352,595 - GFF1246 0.31 +2.1
1,352,595 - GFF1246 0.31 +1.4

Or see this region's nucleotide sequence