Strain Fitness in Xanthobacter sp. DMC5 around GFF124

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF123 and GFF124 are separated by 216 nucleotidesGFF124 and GFF125 are separated by 134 nucleotidesGFF125 and GFF126 are separated by 109 nucleotides GFF123 - hypothetical protein, at 130,421 to 131,485 GFF123 GFF124 - Malonyl CoA-acyl carrier protein transacylase, at 131,702 to 132,688 GFF124 GFF125 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 132,823 to 133,566 GFF125 GFF126 - hypothetical protein, at 133,676 to 136,174 GFF126 Position (kb) 131 132 133Strain fitness (log2 ratio) -1 0 1 2at 130.815 kb on + strand, within GFF123at 130.815 kb on + strand, within GFF123at 130.816 kb on - strand, within GFF123at 131.172 kb on + strand, within GFF123at 131.173 kb on - strand, within GFF123at 131.199 kb on + strand, within GFF123at 131.200 kb on - strand, within GFF123at 133.596 kb on - strandat 133.618 kb on + strandat 133.639 kb on + strandat 133.639 kb on + strandat 133.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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130,815 + GFF123 0.37 +2.0
130,815 + GFF123 0.37 +0.8
130,816 - GFF123 0.37 +2.2
131,172 + GFF123 0.71 +1.3
131,173 - GFF123 0.71 +0.2
131,199 + GFF123 0.73 +1.9
131,200 - GFF123 0.73 +1.8
133,596 - +0.2
133,618 + +0.4
133,639 + +0.0
133,639 + +0.1
133,683 + -0.1

Or see this region's nucleotide sequence