Strain Fitness in Xanthobacter sp. DMC5 around GFF1237

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1235 and GFF1236 are separated by 172 nucleotidesGFF1236 and GFF1237 overlap by 26 nucleotidesGFF1237 and GFF1238 are separated by 16 nucleotides GFF1235 - Ribonuclease J, at 1,338,585 to 1,340,255 GFF1235 GFF1236 - Bifunctional ligase/repressor BirA, at 1,340,428 to 1,341,225 GFF1236 GFF1237 - NADH-quinone oxidoreductase subunit N, at 1,341,200 to 1,342,630 GFF1237 GFF1238 - NADH-quinone oxidoreductase subunit M, at 1,342,647 to 1,344,158 GFF1238 Position (kb) 1341 1342 1343Strain fitness (log2 ratio) -1 0 1 2at 1340.376 kb on + strandat 1340.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,340,376 + +2.3
1,340,377 - -0.1

Or see this region's nucleotide sequence