Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF119 and GFF120 are separated by 219 nucleotides GFF120 and GFF121 overlap by 1 nucleotides GFF121 and GFF122 are separated by 274 nucleotides
GFF119 - hypothetical protein, at 127,593 to 128,465
GFF119
GFF120 - 30S ribosomal protein S18, at 128,685 to 128,945
GFF120
GFF121 - 30S ribosomal protein S6, at 128,945 to 129,397
GFF121
GFF122 - hypothetical protein, at 129,672 to 130,337
GFF122
Position (kb) 128
129
130 Strain fitness (log2 ratio) -1
0
1 at 128.324 kb on - strand, within GFF119 at 128.324 kb on - strand, within GFF119 at 128.324 kb on - strand, within GFF119 at 128.324 kb on - strand, within GFF119 at 128.324 kb on - strand, within GFF119 at 128.447 kb on - strand at 128.540 kb on - strand at 128.540 kb on - strand at 128.540 kb on - strand at 128.540 kb on - strand at 128.540 kb on - strand at 128.540 kb on - strand at 129.794 kb on + strand, within GFF122 at 129.795 kb on - strand, within GFF122 at 129.796 kb on + strand, within GFF122 at 129.953 kb on + strand, within GFF122 at 129.953 kb on + strand, within GFF122 at 129.953 kb on + strand, within GFF122 at 129.953 kb on + strand, within GFF122 at 129.954 kb on - strand, within GFF122 at 130.199 kb on + strand, within GFF122 at 130.212 kb on - strand, within GFF122 at 130.304 kb on + strand at 130.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 128,324 - GFF119 0.84 -1.0 128,324 - GFF119 0.84 +0.6 128,324 - GFF119 0.84 +0.2 128,324 - GFF119 0.84 -0.2 128,324 - GFF119 0.84 -0.6 128,447 - -0.3 128,540 - -0.7 128,540 - -0.8 128,540 - -0.1 128,540 - -0.4 128,540 - -0.8 128,540 - -0.4 129,794 + GFF122 0.18 -0.7 129,795 - GFF122 0.18 -0.3 129,796 + GFF122 0.19 +1.0 129,953 + GFF122 0.42 -0.4 129,953 + GFF122 0.42 -0.1 129,953 + GFF122 0.42 -0.8 129,953 + GFF122 0.42 +1.0 129,954 - GFF122 0.42 -0.7 130,199 + GFF122 0.79 -0.4 130,212 - GFF122 0.81 -0.0 130,304 + +0.0 130,305 - +0.5
Or see this region's nucleotide sequence