Strain Fitness in Xanthobacter sp. DMC5 around GFF1190

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1188 and GFF1189 are separated by 11 nucleotidesGFF1189 and GFF1190 overlap by 4 nucleotidesGFF1190 and GFF1191 are separated by 52 nucleotidesGFF1191 and GFF1192 are separated by 66 nucleotides GFF1188 - HTH-type transcriptional repressor ComR, at 1,289,290 to 1,289,877 GFF1188 GFF1189 - hypothetical protein, at 1,289,889 to 1,290,719 GFF1189 GFF1190 - ECF RNA polymerase sigma factor SigR, at 1,290,716 to 1,291,459 GFF1190 GFF1191 - Plastocyanin, at 1,291,512 to 1,291,859 GFF1191 GFF1192 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 1,291,926 to 1,292,894 GFF1192 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -2 -1 0 1at 1289.731 kb on - strand, within GFF1188at 1290.001 kb on + strand, within GFF1189at 1290.082 kb on + strand, within GFF1189at 1290.115 kb on + strand, within GFF1189at 1290.115 kb on + strand, within GFF1189at 1290.115 kb on + strand, within GFF1189at 1290.115 kb on + strand, within GFF1189at 1290.116 kb on - strand, within GFF1189at 1290.116 kb on - strand, within GFF1189at 1290.182 kb on - strand, within GFF1189at 1290.333 kb on + strand, within GFF1189at 1290.655 kb on + strandat 1290.802 kb on + strand, within GFF1190at 1290.802 kb on + strand, within GFF1190at 1290.803 kb on - strand, within GFF1190at 1290.803 kb on - strand, within GFF1190at 1290.803 kb on - strand, within GFF1190at 1290.806 kb on + strand, within GFF1190at 1291.143 kb on + strand, within GFF1190at 1291.155 kb on + strand, within GFF1190at 1291.156 kb on - strand, within GFF1190at 1291.171 kb on + strand, within GFF1190at 1291.171 kb on + strand, within GFF1190at 1291.216 kb on + strand, within GFF1190at 1291.217 kb on - strand, within GFF1190at 1291.218 kb on + strand, within GFF1190at 1291.218 kb on + strand, within GFF1190at 1291.566 kb on + strand, within GFF1191at 1291.576 kb on + strand, within GFF1191at 1291.577 kb on - strand, within GFF1191at 1291.653 kb on - strand, within GFF1191at 1291.673 kb on + strand, within GFF1191at 1291.674 kb on - strand, within GFF1191at 1292.105 kb on + strand, within GFF1192at 1292.105 kb on + strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.136 kb on + strand, within GFF1192at 1292.152 kb on - strand, within GFF1192at 1292.179 kb on + strand, within GFF1192at 1292.180 kb on - strand, within GFF1192at 1292.228 kb on - strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.399 kb on - strand, within GFF1192at 1292.399 kb on - strand, within GFF1192at 1292.446 kb on + strand, within GFF1192at 1292.447 kb on - strand, within GFF1192at 1292.447 kb on - strand, within GFF1192

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,289,731 - GFF1188 0.75 -1.1
1,290,001 + GFF1189 0.13 -1.4
1,290,082 + GFF1189 0.23 -1.3
1,290,115 + GFF1189 0.27 -1.0
1,290,115 + GFF1189 0.27 -1.3
1,290,115 + GFF1189 0.27 -0.8
1,290,115 + GFF1189 0.27 -0.5
1,290,116 - GFF1189 0.27 +0.2
1,290,116 - GFF1189 0.27 -1.1
1,290,182 - GFF1189 0.35 -0.8
1,290,333 + GFF1189 0.53 -1.1
1,290,655 + +0.6
1,290,802 + GFF1190 0.12 +0.4
1,290,802 + GFF1190 0.12 +0.3
1,290,803 - GFF1190 0.12 +0.3
1,290,803 - GFF1190 0.12 +1.5
1,290,803 - GFF1190 0.12 -1.3
1,290,806 + GFF1190 0.12 -0.9
1,291,143 + GFF1190 0.57 +0.3
1,291,155 + GFF1190 0.59 +0.4
1,291,156 - GFF1190 0.59 -0.1
1,291,171 + GFF1190 0.61 -0.3
1,291,171 + GFF1190 0.61 -0.4
1,291,216 + GFF1190 0.67 +0.9
1,291,217 - GFF1190 0.67 -1.2
1,291,218 + GFF1190 0.67 +0.5
1,291,218 + GFF1190 0.67 -1.1
1,291,566 + GFF1191 0.16 +0.0
1,291,576 + GFF1191 0.18 -0.5
1,291,577 - GFF1191 0.19 -1.1
1,291,653 - GFF1191 0.41 -0.9
1,291,673 + GFF1191 0.46 -1.3
1,291,674 - GFF1191 0.47 +0.2
1,292,105 + GFF1192 0.18 +0.2
1,292,105 + GFF1192 0.18 -0.2
1,292,106 - GFF1192 0.19 +0.7
1,292,106 - GFF1192 0.19 +1.1
1,292,106 - GFF1192 0.19 -0.8
1,292,136 + GFF1192 0.22 -0.6
1,292,152 - GFF1192 0.23 +0.6
1,292,179 + GFF1192 0.26 -2.3
1,292,180 - GFF1192 0.26 -1.4
1,292,228 - GFF1192 0.31 +0.2
1,292,398 + GFF1192 0.49 +0.1
1,292,398 + GFF1192 0.49 -0.0
1,292,398 + GFF1192 0.49 -0.8
1,292,398 + GFF1192 0.49 -0.5
1,292,399 - GFF1192 0.49 +1.2
1,292,399 - GFF1192 0.49 +0.1
1,292,446 + GFF1192 0.54 -0.7
1,292,447 - GFF1192 0.54 -0.3
1,292,447 - GFF1192 0.54 +0.3

Or see this region's nucleotide sequence