Strain Fitness in Xanthobacter sp. DMC5 around GFF1157

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1156 and GFF1157 are separated by 417 nucleotidesGFF1157 and GFF1158 are separated by 476 nucleotides GFF1156 - Lon protease, at 1,249,975 to 1,252,395 GFF1156 GFF1157 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,252,813 to 1,254,081 GFF1157 GFF1158 - ATP-dependent Clp protease proteolytic subunit, at 1,254,558 to 1,255,193 GFF1158 Position (kb) 1252 1253 1254 1255Strain fitness (log2 ratio) -3 -2 -1 0 1at 1254.116 kb on - strandat 1254.144 kb on - strandat 1254.144 kb on - strandat 1254.155 kb on - strandat 1254.347 kb on - strandat 1254.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,254,116 - +1.3
1,254,144 - -1.3
1,254,144 - -3.6
1,254,155 - +0.4
1,254,347 - +0.6
1,254,512 - +0.2

Or see this region's nucleotide sequence