Strain Fitness in Xanthobacter sp. DMC5 around GFF1156

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1155 and GFF1156 are separated by 325 nucleotidesGFF1156 and GFF1157 are separated by 417 nucleotides GFF1155 - DNA-binding protein HRL53, at 1,249,371 to 1,249,649 GFF1155 GFF1156 - Lon protease, at 1,249,975 to 1,252,395 GFF1156 GFF1157 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,252,813 to 1,254,081 GFF1157 Position (kb) 1249 1250 1251 1252 1253Strain fitness (log2 ratio) -1 0 1at 1249.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,249,184 + +0.3

Or see this region's nucleotide sequence