Strain Fitness in Xanthobacter sp. DMC5 around GFF112

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF110 and GFF111 are separated by 89 nucleotidesGFF111 and GFF112 are separated by 123 nucleotidesGFF112 and GFF113 overlap by 1 nucleotides GFF110 - Fluoroacetate dehalogenase, at 120,901 to 121,812 GFF110 GFF111 - hypothetical protein, at 121,902 to 122,189 GFF111 GFF112 - Penicillin-insensitive murein endopeptidase, at 122,313 to 123,194 GFF112 GFF113 - hypothetical protein, at 123,194 to 124,198 GFF113 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1at 121.352 kb on + strand, within GFF110at 121.352 kb on + strand, within GFF110at 121.398 kb on - strand, within GFF110at 122.032 kb on + strand, within GFF111at 122.032 kb on + strand, within GFF111at 122.058 kb on - strand, within GFF111at 123.439 kb on - strand, within GFF113at 123.439 kb on - strand, within GFF113at 124.042 kb on - strand, within GFF113

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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121,352 + GFF110 0.49 -1.7
121,352 + GFF110 0.49 -0.2
121,398 - GFF110 0.54 +0.0
122,032 + GFF111 0.45 -0.3
122,032 + GFF111 0.45 +0.2
122,058 - GFF111 0.54 +0.5
123,439 - GFF113 0.24 +0.2
123,439 - GFF113 0.24 -1.8
124,042 - GFF113 0.84 +1.0

Or see this region's nucleotide sequence